Detail information of GWHGAAEX012614/evm.TU.scaffold_44.151


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG24630Predicted RNA-binding protein Nob1p involved in 26S proteasome assembly
nrgi|695060487|ref|XP_009418635.1|0PREDICTED: RNA-binding protein NOB1 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0U2X2|M0U2X2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P23650_001}
TAIRAT5G411900Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004532777023292614-
Transcript Sequence

Network for GWHGAAEX012614

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF17146.3PIN_6551401.70E-24
PF08772.10NOB1_Zn_bind4835534.90E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11883NOB1 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0042274Biological Processribosomal small subunit biogenesis
GO:0000469Biological Processcleavage involved in rRNA processing
GO:0004521Molecular Functionendoribonuclease activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.060
SRR2545915Juvenile tuber35.120
SRP108465SRR5643513five period of Gastrodia elata34.050
SRR5643514five period of Gastrodia elata29.610
SRR5643515five period of Gastrodia elata29.020
SRR5643524five period of Gastrodia elata29.220
SRR5643525five period of Gastrodia elata18.090
SRR5643528five period of Gastrodia elata21.920
SRR5643658five period of Gastrodia elata19.520
SRR5643659five period of Gastrodia elata26.460
SRR5643660five period of Gastrodia elata29.670
SRR5643661five period of Gastrodia elata25.330
SRR5643662five period of Gastrodia elata27.070
SRR5643663five period of Gastrodia elata25.510
SRR5643664five period of Gastrodia elata22.060
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.240
SRR6049655Rhizomagastrodiae_C368-T10_good_129.430
SRR6049656Rhizomagastrodiae_C368-T07_good_137.990
SRR6049657Rhizomagastrodiae_C368-T07_good_146.950
SRR6049658Rhizomagastrodiae_C368-T04_good_152.240
SRR6049659Rhizomagastrodiae_C368-T04_good_158.130
SRR6049660Rhizomagastrodiae_C368-T01_good_143.580
SRR6049661Rhizomagastrodiae_C368-T04_good_152.210
SRR6049662Rhizomagastrodiae_C368-T01_good_137.720
SRR6049663Rhizomagastrodiae_C368-T01_good_139.650
SRR6049664Rhizomagastrodiae_C368-T10_good_136.130
SRR6049665Rhizomagastrodiae_C368-T10_good_136.130
SRP279888GastroGastrodia elata tuber 33.64
JuvenJuvenile tuber65.20
Mother_GastroMother tuber of Gastrodia elata 30.88
Mother_JuvenMother tuber of Juvenile 45.95