Detail information of GWHGAAEX012615/evm.TU.scaffold_44.152


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|313672810|ref|YP_004050921.1|3.00E-13wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
KOGKOG17870Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins
nrgi|672140761|ref|XP_008794193.1|0PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103710306 [Phoenix dactylifera]
trEMBLtr|A0A061DUX8|A0A061DUX8_THECC0Beige-related and WD-40 repeat-containing protein isoform 1 {ECO:0000313|EMBL:EOX96162.1}
TAIRAT2G455400WD-40 repeat family protein / beige-related

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004532983823407329-
Transcript Sequence

Network for GWHGAAEX012615

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15787.4DUF47047049803.40E-33
PF14844.5PH_BEACH214822436.80E-26
PF02138.17Beach227125471.40E-120
PF00400.31WD40270127345.20E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms36.950
SRR2545915Juvenile tuber23.150
SRP108465SRR5643513five period of Gastrodia elata12.900
SRR5643514five period of Gastrodia elata14.060
SRR5643515five period of Gastrodia elata14.240
SRR5643524five period of Gastrodia elata15.040
SRR5643525five period of Gastrodia elata14.670
SRR5643528five period of Gastrodia elata9.860
SRR5643658five period of Gastrodia elata12.350
SRR5643659five period of Gastrodia elata13.250
SRR5643660five period of Gastrodia elata15.290
SRR5643661five period of Gastrodia elata13.470
SRR5643662five period of Gastrodia elata12.310
SRR5643663five period of Gastrodia elata13.040
SRR5643664five period of Gastrodia elata15.310
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.990
SRR6049655Rhizomagastrodiae_C368-T10_good_113.100
SRR6049656Rhizomagastrodiae_C368-T07_good_115.040
SRR6049657Rhizomagastrodiae_C368-T07_good_114.810
SRR6049658Rhizomagastrodiae_C368-T04_good_116.950
SRR6049659Rhizomagastrodiae_C368-T04_good_119.360
SRR6049660Rhizomagastrodiae_C368-T01_good_114.950
SRR6049661Rhizomagastrodiae_C368-T04_good_117.630
SRR6049662Rhizomagastrodiae_C368-T01_good_112.220
SRR6049663Rhizomagastrodiae_C368-T01_good_114.740
SRR6049664Rhizomagastrodiae_C368-T10_good_112.420
SRR6049665Rhizomagastrodiae_C368-T10_good_112.420
SRP279888GastroGastrodia elata tuber 16.40
JuvenJuvenile tuber22.88
Mother_GastroMother tuber of Gastrodia elata 13.97
Mother_JuvenMother tuber of Juvenile 25.67