Detail information of GWHGAAEX012622/evm.TU.scaffold_44.163
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384134944|ref|YP_005517658.1| | 2.00E-117 | UDP-N-acetylmuramyl tripeptide synthetase [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1] |
| nr | gi|743831830|ref|XP_010934811.1| | 0 | PREDICTED: uncharacterized protein LOC105054877 isoform X2 [Elaeis guineensis] |
| trEMBL | tr|M5X0D3|M5X0D3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12500.1} |
| TAIR | AT1G63680 | 0 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 3605553 | 3619395 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012622
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01225.24 | Mur_ligase | 102 | 150 | 6.10E-11 |
| PF08245.11 | Mur_ligase_M | 191 | 396 | 6.20E-54 |
| PF02875.20 | Mur_ligase_C | 418 | 501 | 4.20E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008360 | Biological Process | regulation of cell shape |
| GO:0051301 | Biological Process | cell division |
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0016881 | Molecular Function | acid-amino acid ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.740 |
| SRR2545915 | Juvenile tuber | 7.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.060 |
| SRR5643514 | five period of Gastrodia elata | 8.460 | |
| SRR5643515 | five period of Gastrodia elata | 8.570 | |
| SRR5643524 | five period of Gastrodia elata | 9.160 | |
| SRR5643525 | five period of Gastrodia elata | 12.210 | |
| SRR5643528 | five period of Gastrodia elata | 8.450 | |
| SRR5643658 | five period of Gastrodia elata | 9.240 | |
| SRR5643659 | five period of Gastrodia elata | 10.030 | |
| SRR5643660 | five period of Gastrodia elata | 11.020 | |
| SRR5643661 | five period of Gastrodia elata | 10.300 | |
| SRR5643662 | five period of Gastrodia elata | 12.390 | |
| SRR5643663 | five period of Gastrodia elata | 11.360 | |
| SRR5643664 | five period of Gastrodia elata | 9.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.280 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.100 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.490 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.05 |
| Juven | Juvenile tuber | 11.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.32 | |
| Mother_Juven | Mother tuber of Juvenile | 11.92 |