Gene detail

Detail information of GWHGAAEX012626/evm.TU.scaffold_44.168

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743853027\|ref\|XP_010940549.1\|	0	PREDICTED: uncharacterized protein LOC105059081 [Elaeis guineensis]
Swissprot	tr\|F4KBP5\|CHR4_ARATH	5.00E-07	Protein CHROMATIN REMODELING 4 {ECO:0000303\|PubMed:16547115}
trEMBL	tr\|M0U7J2\|M0U7J2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_AchrUn_randomP08820_001}
TAIR	AT2G37520	4.00E-173	Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	3725278	3775472	+

Transcript Sequence
>GWHTAAEX012626 GTTTTTTTGAGGATTTGTTTGAAAACACTGAACAGCTCCGTGGACTTCCGTGCTTCCCATCGTTATAAAATTTGCGAAGCTTCAGCAAGCCCTAATCCATTCAGAAACCGGATCAAATTCGCCATCACCGATCACACTGCATCCTCCACCGCCCTCTCTCCTTTCTAATTACCTCTCATGGCGGACAGAAAACGGTCAAATCAGCAGGAACACGTGATCCCCCTAGCCCCGCGCTATGGCCTCAAGCGCGAGTTCGCTTTTGCCGTAAAGTCGCAATCCGAACTCCCTAATTCCCTTGGCAGGACACGCTCCTGCAAGGCTTCTGTCGCAGAACCTTCATCATCTTCCTCAAAAGGCGGTAAGAGGCCCAAACTGAAAGATGACCGGGAGAAGCATCAATCATTTTGCGGCGATCCGCCCGCTGGATCATATATCATTGCTCTCCCAGTAAAATTTCCCGTGAATGCGAACCGTTCTAATTCCGGAGTCGCAGCTGCTCTCCCAACTGCTGATACGCGAAGCGATAAGCATCACAAGGGTGGCGTGGGTTTCTCAATACCGGCTCACAGTAAAGAAGGGTCGAAGACGGATGGCGCCAGTTTAAATTCCCCTGTCTCCACTGCAGGAATTGGGGCATTGAAGAAGGATAAAGCACCGGCGAAGAAGTCAGGTACAAATCACAGAAAATCAAAATCGAAAATTAAGTTTGATAACTCTAAAACAACAACTCCGCAAGGCTCTCTTCATTTATCAGAGGCAGTGTCAGTTTCCCCAGAAGAAAGGAACAGTTATATGGAGAATGAATTAGTATCTAAGCAATCAATCGTTTTAGATGGAAACAATGGCTTCAAGGGTGGCAACGGATTAGCAGAGAAGCCATTAAGGAGGTTCACTCGATCGGCCTTGAAGCTCATGCCTGCTGCTGCAACTCCATCTATGATTGAGCAGCCAGATAAAAAACGAGCAGATAAGCAAATAGAGGGGTTCAGCAAGCCAATTTTGGAGGTTGCTACGCATTCCTTTTCTGTATCATCAGCTGCAACTCCTCTTACAGTAGAGCAGGAAAACAGCAGAACCAAGGGGAAGCAGTATCAAGGTTGCTCAACAGCAGAGCCAAGGTTGCTAAAAAAATTAATTTTTAAACAGCAGAACCAAGAGGAAGCAGTATTAGTAACTGCAACTCCTCATACAGTAGAGCAGGAAAACATAATAGAAATCCCAATCGTTGTTGATTATTGTGGTGGAGCAGAATTTGAGGATGGCTTGTTGGAAGAGTCAATAAAAGCAGAACATGAGGGTTCTGTATCAGTGACTATAATTTCAAATGCTGATAACAATGAGATAGATTTTGTTGCTCCAGTGGAGAAATCTTCAATGACACCTAGAAAGAGGATTACAAAGTCTTTACTCAATACTACATTTGAAGATTCTGTAGTTGCAGATGCGGCCACGCTCTCTAGTGCTGGTTCGGTTGGATCAGAGGAACCAAAAGTGGATAATGATGCTCTCAGTGATAGTAGAAACACAGCATCAAAAAAGAAGATGGAATTGAAGATGTCAAAGAAGATAACTTTGACCAAGTTCCCTTCCAATGTTAGGGAACTGCTAGGCACTGGATTGCTTGAGGGAATGCCTGTGAAGTACATTTCATGCCCTGGTAAGAATGCCGGACTTCAGGGTGTAATAAGGGGAAATGGTATATTGTGCTCTTGTAGCTTTTGCCAGGGATTAAAAGTTGTTTCAGCTTATCAATTTGAGATTCATGCTGGAAGCACTAAAAAGCATCCATCTGATTTCATCTTTTTGCAAAATGGTAAGAGTCTTCATGAAGTGTTGAAGTCATGCTCTGGTGCTTCTCTTGACATGTTGGAAGCTGCAATTCAGAATGCCATTGGTCCATCGCTGCCAATCAAGATTTCTGCATGCCATAAATGTAGTGAGTTGTTTGGTACTGCACGGACTGGAAATTTTGCTTTATTGTGCAATTCTTGCCTTGAGTCAAGTCATCAGGAAGCAACTCCAAGCCCATCACCATTACATGGGATGACTAGCTCTGTTAAGATACCCAGGCAAGTTTTGGTACCTTTTGTGTCTGTTATCACTCCCAAGAGTTTATCTTCCCAGAAAAAAGCATCCTATGGAAAGATAACCAAAAAGGATGTGGGACTGCACAAGTTAGTCTTCATGGATGACATATTACCTCAGGGAACTGAAGTTGGATACTATGTTCGCGGAAAGAGGTTGCTTGAGGGTTATATAAAAGATTCAGGAATATTCTGCCGCTGTTGCAACGGTGTGGTAAGTCCTTCACAATTTGAAGCTCATGCAGGCCAAGCATCACGGCGCAAGCCTTACAACAACATCTATACTTCCAACGGAGTGTCGCTTCATGAGTTATCCATTTCCCTATCGAAAGGTCGTAAATTATCTTCTATTGAAAATGATGACCTGTGTGGCATTTGCTTAGATGGTGGAGATCTTCTACTATGTGATCTTTGCCCTAGAGCTTTTCATAAAGAATGCGTAGGACTCTCTAGCATTCCAAGTGGAGATTGGTTTTGTCAGTACTGCCAAAATTTGCATCTAAAAGACAAATGCTTGGCCAAGAATAACAATGCCATTGCTGCTGGAAGGGTCGATGGAGTTGATCCCATTGAACAGATTATTAAGAGATGCATTCGCATTGTTACTACTCCAGAGAATGATGCTGGTGTATGTGCACTTTGCAGGCAACATGATTTCAGTAGGTCTGGATTTGATCCACTTACTGTTATAATTTGTGACCAGTGTGAAATTGAGTATCATGTTGGCTGTTTGAAGGATCATGGCATGGCTGATCTCCAGGAATTGCCTGTAGGCAAGTGGTTCTGCAGCCTAGATTGCAGCAGGATTCATACGGCTTTACAGGAGTTACTTTGTCAAGGTCCGGTGGCATTAGAAGATATTGATGCAGGCATACTAGGGAGAAAACTTGTCGAAAAAGGTTTAAGCATGGAAACTGCTGCTGATGTAAGATGGAGACTTCTCAGTGACAAAAATGATTTTGCAGACAAGAAACTACTACTATCTCAAGTAGTATCTCTATTCTGTGAGTCATTTGATCCCATAGTTGATCCTGTTTCTGGTCGGGACCTTGTACCTTTCATGGTTTATGGAAGGAATATGAGGGACCAAGATTTTGGTGGGGTGTATTGCTTGGTTTTGACTCTAAATTCATCAGTTATATCAGCTGGGCTTCTTCGTGTCTTGGGATGTGAAGTTGCTGAACTTCCATTAGTTGCTACAAAGAGGGAGAGTCAAGGGTTGGGTTATTTCCAAGCACTTTATTCATGCATTGAAAGAATGTTCAAATCCTTGAAAGTCAAGCACTTTGTGGTTCCTGCGGCTGATGAAGCAGAAGCAATGTGGACGAAGAAGCTTGGTTTTTCTAAATTAACATCAGCCCAGCTGCGAGATTATTCAAGAGGGGCTCGACCTATAATCTTTCAGGGAACATCAGTGCTGCACAAGCAGTTGCTTGAGCACCAGGAACTTCCTATGGCAGCTGACAATGGTGAGTCTTCTTGAAATCACATGGGGCTATCTGATCAAAGAATGAGGGTATACCCACACCCAACATTTTTCAAGTTTATGCTTTAAGGAGATAGATTAAATTGACAAAGCTTGTTGCTGTAATTGGACTCCACTCAATAGTCCAAAATTTCGATATGATCCCCAATGTGCTGCAAGGGACAAAAATCAAGCAAAGTAACAATTGTTAGTGGAAGGCATTCAAGTTGCATTATATTTTGGTGCTAATATCACAAAGGAGACTTGGATATTGTACTCAGATGGTGGGCCCTTAAACATTACGATCATTGGAGATGTCGTGCTAAAGATCGAAAATGAAAATATTTGGAAGTTAAACAAAATCAGGAGTGTTTCTAGCTTAAGTTGAAACCTGATCTCCATTGGACAACCAGCAATCAATTGCTTTAGAGATCTCAGAGCAACGGTGGACACGGGGCAATCCTTTTTCGTTATATTTAAATTTGGTGGCCGTTGGTCTTACGAAATGAAGACTGGCAGCAAGAGATATGATGGCGGCAAGCAAGAAACCCTAAAGTTTGAGAAAGATCTCAATTTCCTTGCGATTAAAGATGCCATCAAAAAAATTTGCCATTCGATCAAGGATCATGGCTATCACTTGCACTACCAGGTCAGCAGCACATTTCGCGAAGAGTATAAGCCGCTCATTAACGATCTTGAAGTGATGGAAATGGCAGCTCAATCTAGCCAAATTGGCCATGCAGAGGTTGTTCTCACGCTGTTCGATGACATTGCTGCCCCTGTTGATACTTTGCAGGTCTCCTATGTGGGAGAAGAAAACACAATGTTGGACCAAAATGGGATGCTGAGTTACCAAGGTGCATATGATGAAGTTTTCTCCATAGGCGCCTATTTCGAAAATTCGGCGGCTTTTAAGAACGCGCTGCGGTACAAAGCTATTTTGGATAATTTTGAATTCAGATTCCAAGCAAGCGATAGGACGAGAGTTATAGCTGTTTGCTCCGACCAAGGGTGTCCGTGGAGAATACGAGCTTCATTACTTGCAGATGGACGAACATTTTCGGTTCGAAGGTATGAACCTACACATTTGTGCCGGGATGTACACAGGTCCGGAACCAAGCATGCCTCAGCCGGTTGGATCTCCGAACAAATACAAGACATTGTGAAGAATCATCCAGACATCACTCCTAAGCATATTAAACGTAGGTTTGAGATTATGTATGGAATTTCTCTTCCTTATATGAAGATATGGAGGTCTAGAGAGTTGGCTCGAAGAAATTTTTTGGAACTGTTACTGAGAATTATCAGTGCATCCCCGCATTGTGTTCTGAGCTTGTTAACAGAAATCCGGGCAGTCGTATCACATACAGTTGCGACAATGATGACAATTCGTTCAAGAGATTTTATGTCGGCTTCAAAGCATGCGTTGATGGCTTTCTTGCAGGCTGCAGATATCTTGTTGGACTCGGTGCCTGCCATTTGAAGTCAAAATATCCTGGGGTATTGTTGTCAGCCAATTCCCTCGATGGGAATAATGATCTCTATACTATAGCATTTGCAGTCGTCGAAGCTAAATCAAGAGCAACTTGGCGGTGGTTTATGGAAAACCTTCATGAGTCATTGGGTCATGGTGTTGAGAAACTAGCTTTTATTATATCAGACATGGAAAATGGATCAGGAGAGGTGATCAATTCAGTATTCCCCAACATGGAAATTAGGGTTTGCGTACGCCACTTGTGGGAAAATATAATGAAGCGTTACAGCTGCCACGATAGCCGCAAGCTTCACAATGCGGTGTGGTCGGCCGCAAATGCGCACAATAGACATGACTTTTGAGGCATTTACTAATGAATTGATTCAACTAAGCCCTCAAGCATATTCATACCTTGCTAGTTTCCCCTATAAATGGGCTAGGAGCTCGTTCTCTGCTGATATAAAAAACGCATGCAACACAAACGACATGGCCGGATCCTTCAACTCTTTGATTGAGGAGTTCAGAAGCAAAGCGGTTGTTGATTTGGTCGACATGATAAGAGGAATGCTTATGGATCGAAGGCATGAAAGGAGACAAAGCTCCGCAAAGTTGAGCGGGGAGTTGGTACCTAATGCCGATGAGCACATCCGAGAGATGACTATGAAAAGAGAGCAATTTGTTGTCAGGCAATCGTCACCGCTCAAAGCTGAGGTTGAATGCGGCCGCGAGCGGAGAGTGGTGGATATTGAGAAAAGAGAATGCAGTTGCGGATATTGGCAAATGATAGGTCTGCCTTGTGTTCATGCAGCCGCTTTTATCGGCACCAAAGAGCATATATTATGGCACACTTGTGTGGATCAGCACTATCTTGTTAAGAGGTATCAAATGGCGTACGATGGTTCGGTATCGGCCATGCCCAGGAGGGATCAATGGGCTGTTGTCCAAGGAGCGAATGTATATGCGCCCTGCACGCTGAGGCGCAGAGGTAGACCCAAAAAGAAACCGGAGAAAAAGTTTATGGAAATCGACATAAAAAGGTCAAGAAGCGAACACAAGTGCAGCAGTTGCGGATTTTGGGGGCATCACAAGAGAACTTGTAAGAATCTTCTTGGTCGGACCCTCTGAGGCCGAAGACAGAGCTGAGCCGCCTGCCACAGTACATTTTGACTTTTTGAAGAAGTTAAGCCTTGTAAGATAAATATGTGGTCGTTGAGAATTGAATCTTTGTAACTCAAAGAGTTCAAATTCAATAGCTCAATAACTAAGGCGCAACACCATTCATTAGTTTTTTGTTTGTTATAATGTTATTAATTAGCTGTTAAATGTTTTTTTTTTAAGCTTCGGTCCCTTTGAAGTTTGCTCTTTTTATTGTTTTTATTATTATTTTTTGAATTTTATGAGCTAATAAAGCTCTCAGAAACGCTGTATCTCACAAAACATTGCATGCGCAGTTTTTGAAATCATTCCGTTGATGTAATAATTGGGAGAGAATTTCAAAAGTAGCATTGAAAATTGTATTATTAAAATAAATGGAAGCTTATATAATGAAAAACCATCATCAAATATCTGTTGGGGTTCTG

Network for GWHGAAEX012626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16135.4	Jas	479	542	1.80E-07
PF16135.4	Jas	660	730	1.40E-23
PF00628.28	PHD	759	800	2.90E-08

Protein Sequence

>GWHPAAEX012626
MADRKRSNQQEHVIPLAPRYGLKREFAFAVKSQSELPNSLGRTRSCKASVAEPSSSSSKGGKRPKLKDDREKHQSFCGDPPAGSYIIALPVKFPVNANRSNSGVAAALPTADTRSDKHHKGGVGFSIPAHSKEGSKTDGASLNSPVSTAGIGALKKDKAPAKKSGTNHRKSKSKIKFDNSKTTTPQGSLHLSEAVSVSPEERNSYMENELVSKQSIVLDGNNGFKGGNGLAEKPLRRFTRSALKLMPAAATPSMIEQPDKKRADKQIEGFSKPILEVATHSFSVSSAATPLTVEQENSRTKGKQYQGCSTAEPRLLKKLIFKQQNQEEAVLVTATPHTVEQENIIEIPIVVDYCGGAEFEDGLLEESIKAEHEGSVSVTIISNADNNEIDFVAPVEKSSMTPRKRITKSLLNTTFEDSVVADAATLSSAGSVGSEEPKVDNDALSDSRNTASKKKMELKMSKKITLTKFPSNVRELLGTGLLEGMPVKYISCPGKNAGLQGVIRGNGILCSCSFCQGLKVVSAYQFEIHAGSTKKHPSDFIFLQNGKSLHEVLKSCSGASLDMLEAAIQNAIGPSLPIKISACHKCSELFGTARTGNFALLCNSCLESSHQEATPSPSPLHGMTSSVKIPRQVLVPFVSVITPKSLSSQKKASYGKITKKDVGLHKLVFMDDILPQGTEVGYYVRGKRLLEGYIKDSGIFCRCCNGVVSPSQFEAHAGQASRRKPYNNIYTSNGVSLHELSISLSKGRKLSSIENDDLCGICLDGGDLLLCDLCPRAFHKECVGLSSIPSGDWFCQYCQNLHLKDKCLAKNNNAIAAGRVDGVDPIEQIIKRCIRIVTTPENDAGVCALCRQHDFSRSGFDPLTVIICDQCEIEYHVGCLKDHGMADLQELPVGKWFCSLDCSRIHTALQELLCQGPVALEDIDAGILGRKLVEKGLSMETAADVRWRLLSDKNDFADKKLLLSQVVSLFCESFDPIVDPVSGRDLVPFMVYGRNMRDQDFGGVYCLVLTLNSSVISAGLLRVLGCEVAELPLVATKRESQGLGYFQALYSCIERMFKSLKVKHFVVPAADEAEAMWTKKLGFSKLTSAQLRDYSRGARPIIFQGTSVLHKQLLEHQELPMAADNGESS

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.200
SRP064423	SRR2545915	Juvenile tuber	13.710
SRP108465	SRR5643513	five period of Gastrodia elata	10.630
	SRR5643514	five period of Gastrodia elata	10.780
	SRR5643515	five period of Gastrodia elata	11.820
	SRR5643524	five period of Gastrodia elata	11.070
	SRR5643525	five period of Gastrodia elata	14.330
	SRR5643528	five period of Gastrodia elata	11.500
	SRR5643658	five period of Gastrodia elata	12.700
	SRR5643659	five period of Gastrodia elata	11.760
	SRR5643660	five period of Gastrodia elata	13.570
	SRR5643661	five period of Gastrodia elata	11.090
	SRR5643662	five period of Gastrodia elata	13.580
	SRR5643663	five period of Gastrodia elata	12.330
	SRR5643664	five period of Gastrodia elata	14.320
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	12.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.860
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.410
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	18.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	14.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.340
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.820
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.790
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.790
SRP279888	Gastro	Gastrodia elata tuber	19.75
	Juven	Juvenile tuber	19.12
	Mother_Gastro	Mother tuber of Gastrodia elata	22.70
	Mother_Juven	Mother tuber of Juvenile	31.01