Gene detail

Detail information of GWHGAAEX012630/evm.TU.scaffold_44.173

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1724	2.00E-112	SCF ubiquitin ligase, Skp1 component
nr	gi\|743776338\|ref\|XP_010918575.1\|	6.80E-152	PREDICTED: SKP1-like protein 21 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8LF97\|ASK21_ARATH	3.00E-138	SKP1-like protein 21
trEMBL	tr\|M0S952\|M0S952_MUSAM	2.00E-143	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P18610_001}
TAIR	AT2G45950	2.00E-112	SKP1-like 20

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	3831560	3853761	+

Transcript Sequence
>GWHTAAEX012630 TTCTTTCCTTTCTCTTAACCCTAATCCTTATCCTCCTTCACGCAGCCGACAACCCCGTTCGCACGCCTCCTTCCCATCCCGAGAGCCTCTCCCATTCTTATCCTCCTCGAGACGCCTTCTCCCTACGCACGCTCGGCTCCATCCTTATCCTACGATCGATGGAGAGGAGAGTCGGCGACACGTGGCTCGAGCCTCTCTCGCCGAGAACCTGTCCGGCCGAGGCAAGAAATTCGTACGAGGGATGGGGAAAGAAATTCGTGCGAGGATAAGAAGACCATAGGCGGCTCGAGGCAAGAAAAGGAGACCCTCTTCAAACCCTAGCCGAGCCCTTTCCTTCGCCGAGAACCTTTCCGGCCGAGCCTTCCAAGACGAACCTCTTCACTCGCCGAGCCCTCAAATCGCCGAACCCTAAGTTTCGCCAACCTTAAGCAAGAGAGCAAGGCTATGAAGTCCTATATATGGCTTCAAACTGCCGATGGCTCTATACAGCAAGTAGAGGAGGATGTTGCGATGTTTTGCCCCATGATCTGCCGAGAAAGACTTCAGTCAGGCATGGGATCTTCTAAGAATTTTGCTATTTCCTTACCTGAGCGTGTAAATGCATCCATACTCAGCTTAATCCTTGATTATTGTCGGTTCCACCAAGCTCCAGGGCGATCAAATAAGGAGAGGAAATCCTTTGATGAGAAATTTATCAAAATTGATACAAAACTGTTATGTGAGCTGGCATCGGCAGCTGACAGCCTTCAGTTGAGGCCTTTGGTAGATCTCACTAGTCGAGCACTTGCTCGCATTATAGAAGGAAGAACGCCTGAAGAAATTCGTGAAATATTCCATTTACCTGATGATCTAACTGAGGAGGAAAAGTTGGAGCCTTTAAGAAATGCCACCAATGATCCTCGTATTCGATTATTAAATCGATTATATGCCAAAAAGAGAAAAGAACTCAAGGAACGACAAATTGTGAAGTATGAAGGAAATGAAGATCACCATGTGGATGAACGTTCAGTTGATGAGCTTTTATCTTTTATAAATGGCGGAGATGGAGATTCTAAGTTTACAAGGTCTGCTAAAAATAAAAAGAAAAACAGGAGGAGAAGAGACCCCTTAGAAGATCCTTCTGCAAATGAACTTGATATTAAACTGCAGGAATCAACGAGTCATTCTATGGGATTCCGTGAGTCTAGTGCAGGTTTTGCATCAAATTCTGCTCGAAAATCTGAAACACAGCATTCTTCTGAAGATCTTTTTCCTGTGAAACTTGAGTTTGATGATGACTATGTTGATGATGATTTAGATCCTGCAATGAAGGAAGAACTTGACAGGGAAGTTGAGGATTTTGCACGAAGGTTGAATTCTAATTGGTTGTCATTAAGCCAAGAAAGAAGGCTTGTTCCAAATATAATGAATGGCAATGGATTGCTCCCAAGGTGTACAGGTTCCTTGGTGCATGTTCTCATAATTGGTGTAACTGTATTGCCTTATATGGGGCTGAACGATGGCCAACAAAGAAGAGATTTATCAATAAAATAACTGTTGCAGAGATGTTGAAAAGGTGGATATGCTCGAAAGGATAGGATGAGAAATGAGTTTATTTGTAACAAAGTTGGAGAGATTCCGTTAGTGTTTAATATTAGAGAATGCTGTCTTTGATTGTTCATATAATATTGAACGAAAACATTTTGGCTCCCTGCTGTAAAATTGAGTGTATTAATTTTACCATGTTAAAAGAGGCTACAAGACATGGTAAAAACACTATGAGAAATGATATTCTCTATTAGAAAGTCTTAATTTTCAGGCTCGGGTTTTGTTCAAAGACGCTATCATTCTCTGCTTCAACGTGCTAAGAATTGTTATTTTTCCGTTGCTTCATGCTATTGCTGACTTTTTTTTTGTTTTTTGCTTTTTGTTTTCTTATCTTGTTCTCAGTCATCTCCAATTTGTCGATCTTCTTTTCTTTTTATCTTTATCCTTGTTATATATATATGGGATCCCTACTAAACTTAGGATATGCCATGTTGATCTGTTAGCAACCTTTAAATTCTTCTACAAGTATGCATATTATCTCTGATCCACAACTCTCAGATGAAAAATTAATTCATTCATTATATCTACTACGAGTGGGGGAATTCTTGTTATATATACATAATTGCAAGAGAAATCAATGGTTGAACCTCAACAACTAAAGGTTTAAACTTTTTGATCAGGAAAGTAGAGACCGCCACCGCATCACTAAAGAATACCTCCTCCCTTCCCGGACAGAGACACGGCCCTTGCCGCTGCAAATTCCCTTACTTTCAAATTTGCGGTGTGGAAACCATTGTTTCATTTCTCATCATCAGAGGCCTTCGCTGTAAATTTGCAGATCTGGAGAAGATAACTGACTGCAAAATCCTCTTTGGAGAATCATTTTTTTCCCATATATTTTTTGGCGGCTAATAATAATTTGCAGCAGATAAACAAACAGCCATGTCTTAGAAAGAGGGCTCCAAACCGGCAATATCAATCTTCTTGTTTTTAAGCAAAAGCATATAAATGCTGGTTTTGATTGGGATGCAGACTGCACTATATATATATATATATATACAGGGCAGTCGCATCAAAAGTGTAAAAGATTTGCTCATGCTTATTTTGCTGTATTATTCTTTTTAATTTTTTTTTTAAGTTTATATTGTTCTGATATTGGGATAAAATCCATCCGTTTACTGTTGTTTTGGGGGCCTTCTCCTCAGTGTCCCAACTTATACTCGGATCAAAGCTTACACTTCTATGGATGGGAAGCCTATTTTACTCATGTTTCTATGGAAATGGAATGATTTCACTTCTATGGATGGGAAGCCTACA

Network for GWHGAAEX012630

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03931.14	Skp1_POZ	5	67	2.70E-05
PF01466.18	Skp1	105	142	1.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	SKP1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.680
SRP064423	SRR2545915	Juvenile tuber	15.250
SRP108465	SRR5643513	five period of Gastrodia elata	16.640
	SRR5643514	five period of Gastrodia elata	17.220
	SRR5643515	five period of Gastrodia elata	16.490
	SRR5643524	five period of Gastrodia elata	17.680
	SRR5643525	five period of Gastrodia elata	21.880
	SRR5643528	five period of Gastrodia elata	24.550
	SRR5643658	five period of Gastrodia elata	21.880
	SRR5643659	five period of Gastrodia elata	18.720
	SRR5643660	five period of Gastrodia elata	19.050
	SRR5643661	five period of Gastrodia elata	17.440
	SRR5643662	five period of Gastrodia elata	19.700
	SRR5643663	five period of Gastrodia elata	19.070
	SRR5643664	five period of Gastrodia elata	16.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.560
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	16.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.330
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.670
SRP279888	Gastro	Gastrodia elata tuber	19.04
	Juven	Juvenile tuber	15.73
	Mother_Gastro	Mother tuber of Gastrodia elata	29.84
	Mother_Juven	Mother tuber of Juvenile	31.66