Detail information of GWHGAAEX012631/evm.TU.scaffold_44.174
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297616976|ref|YP_003702135.1| | 3.00E-127 | UDP-N-acetylmuramyl-tripeptide synthetase [Syntrophothermus lipocalidus DSM 12680] |
| nr | gi|645267097|ref|XP_008238913.1| | 0 | PREDICTED: uncharacterized protein LOC103337530 [Prunus mume] |
| trEMBL | tr|M5X0D3|M5X0D3_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ12500.1} |
| TAIR | AT1G63680 | 0 | acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 3864394 | 3869399 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012631
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01225.24 | Mur_ligase | 87 | 164 | 2.10E-08 |
| PF08245.11 | Mur_ligase_M | 177 | 382 | 9.30E-53 |
| PF02875.20 | Mur_ligase_C | 403 | 487 | 2.90E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0009058 | Biological Process | biosynthetic process |
| GO:0008360 | Biological Process | regulation of cell shape |
| GO:0051301 | Biological Process | cell division |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0016881 | Molecular Function | acid-amino acid ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.890 |
| SRR2545915 | Juvenile tuber | 3.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.910 |
| SRR5643514 | five period of Gastrodia elata | 3.280 | |
| SRR5643515 | five period of Gastrodia elata | 4.720 | |
| SRR5643524 | five period of Gastrodia elata | 4.460 | |
| SRR5643525 | five period of Gastrodia elata | 7.310 | |
| SRR5643528 | five period of Gastrodia elata | 5.900 | |
| SRR5643658 | five period of Gastrodia elata | 5.880 | |
| SRR5643659 | five period of Gastrodia elata | 3.080 | |
| SRR5643660 | five period of Gastrodia elata | 3.150 | |
| SRR5643661 | five period of Gastrodia elata | 3.310 | |
| SRR5643662 | five period of Gastrodia elata | 5.920 | |
| SRR5643663 | five period of Gastrodia elata | 3.860 | |
| SRR5643664 | five period of Gastrodia elata | 3.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.560 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.990 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.860 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.64 |
| Juven | Juvenile tuber | 2.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.70 | |
| Mother_Juven | Mother tuber of Juvenile | 4.56 |