Detail information of GWHGAAEX012639/evm.TU.scaffold_44.185
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|30262474|ref|NP_844851.1| | 6.00E-65 | DEAD/DEAH box helicase [Bacillus anthracis str. Ames] |
| KOG | KOG0342 | 0 | ATP-dependent RNA helicase pitchoune |
| nr | gi|743831989|ref|XP_010934855.1| | 0 | PREDICTED: probable DEAD-box ATP-dependent RNA helicase 48 [Elaeis guineensis] |
| Swissprot | tr|Q9C8S9|RH48_ARATH | 0 | Probable DEAD-box ATP-dependent RNA helicase 48 |
| trEMBL | tr|D7TW32|D7TW32_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI34707.3} |
| TAIR | AT1G63250 | 0 | DEA(D/H)-box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4053772 | 4090676 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012639
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 319 | 496 | 1.80E-41 |
| PF00271.30 | Helicase_C | 541 | 647 | 3.90E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.920 |
| SRR2545915 | Juvenile tuber | 9.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.370 |
| SRR5643514 | five period of Gastrodia elata | 4.250 | |
| SRR5643515 | five period of Gastrodia elata | 4.350 | |
| SRR5643524 | five period of Gastrodia elata | 3.900 | |
| SRR5643525 | five period of Gastrodia elata | 1.530 | |
| SRR5643528 | five period of Gastrodia elata | 1.530 | |
| SRR5643658 | five period of Gastrodia elata | 1.530 | |
| SRR5643659 | five period of Gastrodia elata | 7.550 | |
| SRR5643660 | five period of Gastrodia elata | 7.490 | |
| SRR5643661 | five period of Gastrodia elata | 5.770 | |
| SRR5643662 | five period of Gastrodia elata | 7.330 | |
| SRR5643663 | five period of Gastrodia elata | 6.690 | |
| SRR5643664 | five period of Gastrodia elata | 6.880 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.780 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.380 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 7.070 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.320 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.940 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.540 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.93 |
| Juven | Juvenile tuber | 16.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.88 | |
| Mother_Juven | Mother tuber of Juvenile | 8.51 |