Detail information of GWHGAAEX012641/evm.TU.scaffold_44.187
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20807804|ref|NP_622975.1| | 8.00E-88 | DNA mismatch repair protein MutS [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG0218 | 0 | Mismatch repair MSH3 |
| nr | gi|743831550|ref|XP_010934727.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: DNA mismatch repair protein MSH3 [Elaeis guineensis] |
| Swissprot | tr|O65607|MSH3_ARATH | 0 | DNA mismatch repair protein MSH3 |
| trEMBL | tr|F6HP08|F6HP08_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56414.1} |
| TAIR | AT4G25540 | 0 | homolog of DNA mismatch repair protein MSH3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4165364 | 4226561 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012641
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01624.19 | MutS_I | 104 | 214 | 3.00E-25 |
| PF05188.16 | MutS_II | 233 | 307 | 6.40E-06 |
| PF05192.17 | MutS_III | 422 | 746 | 2.40E-35 |
| PF00488.20 | MutS_V | 801 | 1011 | 6.10E-65 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08736 | MSH3 | Mismatch repair | map03430 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006298 | Biological Process | mismatch repair |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0030983 | Molecular Function | mismatched DNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.460 |
| SRR2545915 | Juvenile tuber | 0.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.820 |
| SRR5643514 | five period of Gastrodia elata | 2.170 | |
| SRR5643515 | five period of Gastrodia elata | 1.440 | |
| SRR5643524 | five period of Gastrodia elata | 2.140 | |
| SRR5643525 | five period of Gastrodia elata | 1.940 | |
| SRR5643528 | five period of Gastrodia elata | 1.120 | |
| SRR5643658 | five period of Gastrodia elata | 0.520 | |
| SRR5643659 | five period of Gastrodia elata | 1.110 | |
| SRR5643660 | five period of Gastrodia elata | 1.250 | |
| SRR5643661 | five period of Gastrodia elata | 1.770 | |
| SRR5643662 | five period of Gastrodia elata | 1.850 | |
| SRR5643663 | five period of Gastrodia elata | 1.580 | |
| SRR5643664 | five period of Gastrodia elata | 1.390 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.900 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.400 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.600 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.060 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.290 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.04 |
| Juven | Juvenile tuber | 2.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.40 | |
| Mother_Juven | Mother tuber of Juvenile | 5.13 |