Gene detail

Detail information of GWHGAAEX012642/evm.TU.scaffold_44.188

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2777	7.00E-113	tRNA-specific adenosine deaminase 1
nr	gi\|695016997\|ref\|XP_009395421.1\|	3.74E-147	PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0SLB0\|M0SLB0_MUSAM	4.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P05430_001}
TAIR	AT1G01760	7.00E-113	adenosine deaminases;RNA binding;RNA binding;adenosine deaminases

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	4227124	4244709	-

Transcript Sequence
>GWHTAAEX012642 CAGAAGTAGGTTTTAAACCCCCGCTTGGCAACATGTCGAGCCTCTCACAGAAATGGATTGGGCAGACAGAGTCTCCGACGCTGTATTCTCTCTCTATCGCTCGCTTCCGAAAAAGGGAAAGCCTCAAGGACGAGAAATCACTGTATTGGCCGCTTTCCTTCTTTCTTCTCCCTCAAATGGTCTTGAAGTCGTGGCTCTCGGGACGGGGACCAAATGCATCGGAAAATCTCTCCTTAGTCCGAACGGCGACGCTGTGAACGATTCCCATGCCGAAATTGTTGCCAGGAGAGCTCTTCTGAGGTTTTTTTACTCAGAGATTGCTCGGATTTGCAGCATTGGCTGCGGTAGCGACAATCCCGGGGAAAGAAGTTTAAACGGGTCGGAAATTTTTTTCCGCTCGGATGCACGTTCTAACATTGCCAAGTATGAAATGATTCCTGGCTGGCTCTTGCATTTATACATCACTCAGCTGCCATGCGGGACGATGGACCCTGCTTTTTTATCAAGGCGCCTCCAAGAGAATTCCTTGATTGAACTTGAAGAAGAGGAGCTTCTATTTCCGACTTTAAAGTCCTCTGTAACTGTTCAAAAGAAACCTGGACGAGGTGATGCAACTTTCTCAATGAGCTGCTTTGATAAAATAACCCGTTGGAATATTGTGGGAATCCAAGGTGCTTTACTTTCTAACATTTTGCAGCCAGTGTATATTTCTTCTTTGACGATAGGAAAATCGAAATATACTTTTGACGAGTTTTCTCTAGCAAATCATCTAGAAAGTGCTTTTCATGTTCGCCTGAATTCTTTGAACATTAAACTCTGCAGACCATTTCAATTGAAAAAGTTTTCTGTTTTTGAGGCTTCTTTTCCACCAAAAGAATTTCAGCAATCGGAAAATGGTGCATCTAATTTAACATGCGGCTATTCAATCGTCTGGAATAAATCTGGATTGCATGAAGTTATCTTGGGAACAACCGGAAGGAAGCAGGGAACTTCTTCAAAAGGATCTCTATTTCCAACAACGGAATCTTCTTTGTGCAAGAGAAGATTATTGGAAGTGTTCATGTCCCTGCAAATATCATTTGCATTTCCAGTGGAAGAAATTTCATATCATAAGCTGAAGCTAATGGCTTCTGAGTATCAATCTGCTCTTAAAGTGTTTAAAGACAGCTCCCTTTTTACTTCATGGCATCCCAAACCTCCAAATCTTGAGAATTTTTTTCTTAAGAGATGAGCTTCAAATAAGAAACAAATATGTGATTGGTGGGAATTGAACTTATGATATACGATAATAAATCAAGAGACCCACTAATCTTTTTGTGAGATAAAAAATAATTTTTATTTTTAGAGTTATTTTGGAGTAATGTAATTATATATATATATATATATATATGTTTGGAAAATGGTGAATTATTTGAAAATAATTCAAGTGATAATTGCATGTATGCCACGTGGAACATATGCATTTATATTTAGATAACTTAAATTGATGAATTTTTTGGTAATTTTGTAAAATGTATTTTGTGTATGGTGTGTATGAAATTTCCGCTATTGTTAAATCTAAATTAATGTTTTTCTTAAGTTTACTGTATAGTTTATTTCATCTGTTCATGATATGTAATATAAAGATTACATAAATATTTTGACTTTATTTTCTTCTCCTTTTCTATTTTCGTAAGAGCTTCGATAAAGAATAAATATTTGCCCTGAGTTCAAAATGAAATGCATGCAAAATTCTAGACAAATTTATGTACTTGCAAAATTCACATTTTCATAATTACCAAGTAATTACAATTAATTTTGAAACTAATATGGATTATAATTTCTTACTAAGATTTTAAGGCTCCATTCGGATCATAAATTTTGAGTTGAAATATATTTTTTTTATATTTGAAGCTCATCTAATTATTAAAGTGTGTAAATGTATTCGCTTTGCCCCGCTTCATCCTAGTTTATTGTAGGCTTTGTCCCACTTTGACGCTGGCTTTGTTTGCTCTGTTCCATTTCGGCACTGCAAGTGAAAGCCATTGTTGATTCCCTCTTCGCTGTCAGTTTGTCTTGGGTCAATGCCAACACTTCAAGCGGAAGCCATTGTCGCCCCCCGCTTCGTTGCCAGCTTCGTCCCTCCCGTCAACGCTTGCGCGTGGCCACATAGTCGGCCAATAATATCCCCAGCTTATCATCGACAACAACCTTCACAGAGATGCTTATATATTTGGGCTTTGAATTGGGCTCCCTTTTTAAATGAAGCTTGGTGGGAGAATTTGATTCTGTCGGAATTAGACATAAAATTTTCTTGCCGCACGAAGCTTTGTGTGCTGACTTTGTCATCCCTGAATTGTGCTTCGACTTCTTCGTCTTCAAGCCAGGCATTCAAAAAGTCACAACCGTGAATCTTCAACTTCGTCTCTTTCACGCCCCACAAGCATCGTTCGTGAGCTTCATGTTCTCCGTCCTCCTCGACCATCACAAGCTTCGTAAGCATCAACTTTGTTCATGGGTTGCATCACAATGAATCGGCCCAACTCAGCTACAAGAGCTTTGTTGTCATCGGCCTCGATAGCATCGCACTAAATCAGCCCAACTCCGTTCGTGGGATGAATCACAACAAATCATCCTAGTCGACCAGCACTCTGTTGTAGCGATTCAGCTTCTACTTCCTAATCCCCTCGTTGTTGCGGTTTCATCTTAGCTGCCCAAGACTTCCTCCTGTTATATTAAATATTATTTTTATATTAATTATCAATTTATACAAGACTATATAGACATTTATAATATTAAAGTTATTTCATTAGTTATAATACAAATAGGTATAGTCTTTATCACTTT

Network for GWHGAAEX012642

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02137.17	A_deamin	48	382	1.20E-76

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006396	Biological Process	RNA processing
GO:0003723	Molecular Function	RNA binding
GO:0004000	Molecular Function	adenosine deaminase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.300
SRP064423	SRR2545915	Juvenile tuber	9.300
SRP108465	SRR5643513	five period of Gastrodia elata	5.190
	SRR5643514	five period of Gastrodia elata	6.070
	SRR5643515	five period of Gastrodia elata	5.820
	SRR5643524	five period of Gastrodia elata	6.460
	SRR5643525	five period of Gastrodia elata	3.200
	SRR5643528	five period of Gastrodia elata	4.340
	SRR5643658	five period of Gastrodia elata	3.510
	SRR5643659	five period of Gastrodia elata	4.230
	SRR5643660	five period of Gastrodia elata	4.770
	SRR5643661	five period of Gastrodia elata	5.400
	SRR5643662	five period of Gastrodia elata	5.040
	SRR5643663	five period of Gastrodia elata	4.330
	SRR5643664	five period of Gastrodia elata	4.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.960
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.480
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.130
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.860
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.620
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.620
SRP279888	Gastro	Gastrodia elata tuber	3.81
	Juven	Juvenile tuber	3.94
	Mother_Gastro	Mother tuber of Gastrodia elata	5.57
	Mother_Juven	Mother tuber of Juvenile	5.40