Detail information of GWHGAAEX012647/evm.TU.scaffold_44.194
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325959049|ref|YP_004290515.1| | 1.00E-84 | sugar transporter [Methanobacterium sp. AL-21] |
| KOG | KOG0254 | 2.00E-155 | Predicted transporter (major facilitator superfamily) |
| nr | gi|695071102|ref|XP_009382608.1| | 0 | PREDICTED: D-xylose-proton symporter-like 2 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q6AWX0|XYLL2_ARATH | 0 | D-xylose-proton symporter-like 2 |
| trEMBL | tr|M0RPV4|M0RPV4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P06240_001} |
| TAIR | AT5G59250 | 2.00E-155 | Major facilitator superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4319002 | 4377241 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012647
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00083.23 | Sugar_tr | 54 | 460 | 4.20E-80 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 30.180 |
| SRR2545915 | Juvenile tuber | 41.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.460 |
| SRR5643514 | five period of Gastrodia elata | 26.790 | |
| SRR5643515 | five period of Gastrodia elata | 27.080 | |
| SRR5643524 | five period of Gastrodia elata | 30.670 | |
| SRR5643525 | five period of Gastrodia elata | 23.420 | |
| SRR5643528 | five period of Gastrodia elata | 23.820 | |
| SRR5643658 | five period of Gastrodia elata | 31.350 | |
| SRR5643659 | five period of Gastrodia elata | 35.420 | |
| SRR5643660 | five period of Gastrodia elata | 33.830 | |
| SRR5643661 | five period of Gastrodia elata | 34.430 | |
| SRR5643662 | five period of Gastrodia elata | 34.410 | |
| SRR5643663 | five period of Gastrodia elata | 36.510 | |
| SRR5643664 | five period of Gastrodia elata | 32.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.730 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.760 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.270 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 33.650 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 34.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 27.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 34.14 |
| Juven | Juvenile tuber | 40.68 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 23.49 | |
| Mother_Juven | Mother tuber of Juvenile | 27.20 |