Detail information of GWHGAAEX012652/evm.TU.scaffold_44.202
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3002 | 7.00E-165 | Zn finger protein |
| nr | gi|743859361|ref|XP_010942715.1| | 2.48E-175 | PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Elaeis guineensis] |
| Swissprot | tr|Q9M2P4|SINA2_ARATH | 2.00E-165 | E3 ubiquitin-protein ligase SINAT2 |
| trEMBL | tr|U5CZM7|U5CZM7_AMBTC | 1.00E-172 | E3 ubiquitin-protein ligase {ECO:0000256|RuleBase:RU201113} |
| TAIR | AT3G58040 | 7.00E-165 | seven in absentia of Arabidopsis 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4688818 | 4716941 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012652
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03145.15 | Sina | 92 | 291 | 2.10E-76 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04506 | SIAH1 | Ubiquitin mediated proteolysis | map04120 |
| MAPK signaling pathway - fly | map04013 | ||
| Wnt signaling pathway | map04310 | ||
| p53 signaling pathway | map04115 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006511 | Biological Process | ubiquitin-dependent protein catabolic process |
| GO:0007275 | Biological Process | multicellular organism development |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.460 |
| SRR2545915 | Juvenile tuber | 21.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.600 |
| SRR5643514 | five period of Gastrodia elata | 27.710 | |
| SRR5643515 | five period of Gastrodia elata | 28.950 | |
| SRR5643524 | five period of Gastrodia elata | 28.750 | |
| SRR5643525 | five period of Gastrodia elata | 29.560 | |
| SRR5643528 | five period of Gastrodia elata | 32.780 | |
| SRR5643658 | five period of Gastrodia elata | 32.330 | |
| SRR5643659 | five period of Gastrodia elata | 28.720 | |
| SRR5643660 | five period of Gastrodia elata | 28.980 | |
| SRR5643661 | five period of Gastrodia elata | 28.420 | |
| SRR5643662 | five period of Gastrodia elata | 32.730 | |
| SRR5643663 | five period of Gastrodia elata | 29.860 | |
| SRR5643664 | five period of Gastrodia elata | 27.790 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.850 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 26.100 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 24.630 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 24.180 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.540 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.350 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 25.230 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 28.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 28.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.88 |
| Juven | Juvenile tuber | 26.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.28 | |
| Mother_Juven | Mother tuber of Juvenile | 32.48 |