Gene detail

Detail information of GWHGAAEX012654/evm.TU.scaffold_44.204

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG3871	1.00E-161	Cell adhesion complex protein bystin
nr	gi\|743859267\|ref\|XP_010942665.1\|	0	PREDICTED: bystin [Elaeis guineensis]
trEMBL	tr\|M0TEM0\|M0TEM0_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P04300_001}
TAIR	AT1G31660	1.00E-161	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	4734160	4752056	+

Transcript Sequence
>GWHTAAEX012654 GCTAGGGTTACGCTCTTGTTTATAGCATGGCCGGGAAGAAGCGGAAGCCGCAGCTGCTGCAGCAGAAGCCGCAGCACCGAGTGGCCATCGACGAAGACGATGACTCCGTCGTATCGAAGAAGACAGTTCGGCACACTAAGAAGCATCAGGAAGGAGACAAGTTGATATCTTCTGATATCAGCTTAAAGATCCTTAAGGAGGCTTTCAATCAGCAGAAAGAAATTGCCCAGGAAGAAGAAGCGGAACTGAACCCTGCGCCATTCCCGCAAGCTGTGAACTCTGACTCGGAGGGAAAGAGCGATGACGAAGGTTATGATTTTGATGGGTTTTTGGAAAGCATTAGTGCACACGATTTGGGCGTTGAAGAGATGAATGAGGAAGATGAAGCGGCCTTGGCTGCTTTCTTTCCCAGTGATGCAGGACCGCAGCTTACTCTGGCTGATATCATTATCAAGAAAATTAAGGAAAAGGACACTCAGGTTTCCTCTGAGGAGCGGCCCATGCCAAAACTGGATGATGGTGTCATAGATATATTCAAGAAAGTTGGAAGCGTGCTCAGTAGATACACAAGTGGAAAAGTACCAAAGGTGCTGCAACGCATTGCAATAATGGAACGTTGGGAAGAGGTACTTTATATAACCGAGCCAGAGAAATGGTCCCCAAATGCAATGTATCGAGCTACCAGAATATTTGCATCAAGGTTCAGCCCTAATAGGGCTCAACGGTTTTACAAGCTCGTGCTACTTCCTCGTGTCAGAGAAGAAATTCAAAAGAACAAACGACTTCATCGTGCCCTTTATGAAGCTGTAAAAAAGAGCCTTTACAAACCAGCTGGATTTTTTAAAGGAATTTTATTTCCTTTATGTCAGTCACGGACATGCACCCTTATAGAAGCACATATTATTGGAAGTGTTATTCAAAAAGTATCAATACCTCCACTTCATTCAAGTGTAGCATTGATGACATTAGCGGGTATGGATTACTATGGGACAACCAGTTTTTTTATGAAGTTACTTATTGAGAAGAAGTATGCACTGCCATATCGAGTACTTGATGCTCTAGTCTTACATTTTATGAGATTCCTCGAAGATAAAAGGGTTATGCCTGTGATATGGCATCAAACGCTTCTTGCTTTTGTACAAAGGTACAAGAATGAGTTGACGAGGGCAGACAAGGATAATCTGGATCGGTTAATACAACACCAAAAACATTATTTGGTTACCCCAGAAATTCGTAGGGAACTGAAAAATAGTCGACACAGGGGTGAAAAGGAAGATGTAGTTTGTCAAGCCCCTTTCATGTCTGTTATAAATAAGCCAATTAAGGAAGACAGATGGGATATTCCTGATGTGCCTATGGAGGAGGATTAAAGGTTGCAGCTGACGTTTTTGCTGCGGCTACTAGTAAAGTATGCGCATTCCAGATACTTTGCTGCCAAAGGTCGTGTACATCAGGATGAGTAGGAATTGGCTTATTAAGGAACCATATTAAGATTGATATTTAGCACAAGAAGGCTTTTATTTTAGTTTAGCAATTGCATCTTTATATTCTATTTAAAAAGCTTTGTATAATTCTAATGTTGTGGATGCATTTCTGTGAACTGATACTATGGAATGTAAATCTGAATGAATGGATGGATGTTTTTTTGTTTATTGTGCATGGCTTTGGATGCAT

Network for GWHGAAEX012654

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05291.10	Bystin	134	415	2.30E-124

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.260
SRP064423	SRR2545915	Juvenile tuber	67.860
SRP108465	SRR5643513	five period of Gastrodia elata	58.360
	SRR5643514	five period of Gastrodia elata	57.920
	SRR5643515	five period of Gastrodia elata	52.300
	SRR5643524	five period of Gastrodia elata	59.150
	SRR5643525	five period of Gastrodia elata	69.230
	SRR5643528	five period of Gastrodia elata	71.200
	SRR5643658	five period of Gastrodia elata	58.440
	SRR5643659	five period of Gastrodia elata	53.760
	SRR5643660	five period of Gastrodia elata	51.720
	SRR5643661	five period of Gastrodia elata	52.160
	SRR5643662	five period of Gastrodia elata	57.020
	SRR5643663	five period of Gastrodia elata	48.570
	SRR5643664	five period of Gastrodia elata	51.360
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	40.480
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	51.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	44.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	38.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	45.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.540
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	46.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.570
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	60.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	60.730
SRP279888	Gastro	Gastrodia elata tuber	60.83
	Juven	Juvenile tuber	60.53
	Mother_Gastro	Mother tuber of Gastrodia elata	61.91
	Mother_Juven	Mother tuber of Juvenile	61.39