Detail information of GWHGAAEX012656/evm.TU.scaffold_44.206
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|225850536|ref|YP_002730770.1| | 2.00E-17 | metallophosphoesterase [Persephonella marina EX-H1] |
| KOG | KOG2310 | 0 | DNA repair exonuclease MRE11 |
| nr | gi|743820919|ref|XP_010931906.1| | 0 | PREDICTED: double-strand break repair protein MRE11-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9XGM2|MRE11_ARATH | 0 | Double-strand break repair protein MRE11 |
| trEMBL | tr|E0CST0|E0CST0_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI20379.3} |
| TAIR | AT5G54260 | 0 | DNA repair and meiosis protein (Mre11) |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4773584 | 4837369 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012656
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00149.27 | Metallophos | 8 | 252 | 2.20E-14 |
| PF04152.13 | Mre11_DNA_bind | 297 | 450 | 3.90E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10865 | MRE11 | Homologous recombination | map03440 |
| Non-homologous end-joining | map03450 | ||
| Cellular senescence | map04218 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006302 | Biological Process | double-strand break repair |
| GO:0008408 | Molecular Function | 3'-5' exonuclease activity |
| GO:0030145 | Molecular Function | manganese ion binding |
| GO:0004519 | Molecular Function | endonuclease activity |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0030870 | Cellular Component | Mre11 complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 36.230 |
| SRR2545915 | Juvenile tuber | 30.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.060 |
| SRR5643514 | five period of Gastrodia elata | 19.720 | |
| SRR5643515 | five period of Gastrodia elata | 19.310 | |
| SRR5643524 | five period of Gastrodia elata | 20.550 | |
| SRR5643525 | five period of Gastrodia elata | 24.210 | |
| SRR5643528 | five period of Gastrodia elata | 24.370 | |
| SRR5643658 | five period of Gastrodia elata | 35.540 | |
| SRR5643659 | five period of Gastrodia elata | 17.980 | |
| SRR5643660 | five period of Gastrodia elata | 18.390 | |
| SRR5643661 | five period of Gastrodia elata | 16.400 | |
| SRR5643662 | five period of Gastrodia elata | 19.380 | |
| SRR5643663 | five period of Gastrodia elata | 18.970 | |
| SRR5643664 | five period of Gastrodia elata | 17.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 20.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 22.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 26.370 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.820 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 22.960 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 22.620 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.830 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.830 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.05 |
| Juven | Juvenile tuber | 28.41 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.00 | |
| Mother_Juven | Mother tuber of Juvenile | 30.37 |