Detail information of GWHGAAEX012657/evm.TU.scaffold_44.207
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|410665477|ref|YP_006917848.1| | 3.00E-87 | cellulase [Simiduia agarivorans SA1 = DSM 21679] |
| nr | gi|743817138|ref|XP_010930836.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: endoglucanase 3-like [Elaeis guineensis] |
| Swissprot | tr|Q9C9H5|GUN9_ARATH | 0 | Endoglucanase 9 (Precursor) |
| trEMBL | tr|W1NRV2|W1NRV2_AMBTC | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
| TAIR | AT1G71380 | 0 | cellulase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 4879951 | 4883324 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012657
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00759.18 | Glyco_hydro_9 | 37 | 486 | 1.50E-138 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01179 | E3.2.1.4 | Metabolic pathways | map01100 |
| Starch and sucrose metabolism | map00500 | ||
| Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004553 | Molecular Function | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.210 |
| SRR2545915 | Juvenile tuber | 0.120 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.040 |
| SRR5643514 | five period of Gastrodia elata | 48.960 | |
| SRR5643515 | five period of Gastrodia elata | 40.570 | |
| SRR5643524 | five period of Gastrodia elata | 35.140 | |
| SRR5643525 | five period of Gastrodia elata | 0.050 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.080 | |
| SRR5643659 | five period of Gastrodia elata | 0.220 | |
| SRR5643660 | five period of Gastrodia elata | 0.150 | |
| SRR5643661 | five period of Gastrodia elata | 0.340 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.090 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 161.030 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 114.930 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 135.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 56.560 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 110.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 123.580 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 58.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 84.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 161.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 148.820 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 269.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 269.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.03 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.10 | |
| Mother_Juven | Mother tuber of Juvenile | 22.86 |