Detail information of GWHGAAEX012671/evm.TU.scaffold_44.228
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 1.00E-25 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0084 | 4.00E-131 | GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins |
| nr | gi|694995467|ref|XP_009388825.1| | 5.77E-138 | PREDICTED: GTP-binding protein YPTM2-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q05737|YPTM2_MAIZE | 5.00E-132 | GTP-binding protein YPTM2 |
| trEMBL | tr|M0S925|M0S925_MUSAM | 5.00E-137 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P18340_001} |
| TAIR | AT1G02130 | 4.00E-131 | RAS 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 5359004 | 5378414 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012671
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 10 | 170 | 8.20E-67 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07874 | RAB1A | Autophagy - animal | map04140 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 49.640 |
| SRR2545915 | Juvenile tuber | 63.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 101.880 |
| SRR5643514 | five period of Gastrodia elata | 117.680 | |
| SRR5643515 | five period of Gastrodia elata | 121.530 | |
| SRR5643524 | five period of Gastrodia elata | 134.690 | |
| SRR5643525 | five period of Gastrodia elata | 197.230 | |
| SRR5643528 | five period of Gastrodia elata | 307.880 | |
| SRR5643658 | five period of Gastrodia elata | 217.200 | |
| SRR5643659 | five period of Gastrodia elata | 93.170 | |
| SRR5643660 | five period of Gastrodia elata | 87.900 | |
| SRR5643661 | five period of Gastrodia elata | 84.610 | |
| SRR5643662 | five period of Gastrodia elata | 90.490 | |
| SRR5643663 | five period of Gastrodia elata | 84.790 | |
| SRR5643664 | five period of Gastrodia elata | 74.960 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.790 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 131.170 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 95.860 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 70.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 77.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 73.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 78.080 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 92.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 113.360 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 98.760 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 127.390 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 127.390 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 85.16 |
| Juven | Juvenile tuber | 118.73 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 299.88 | |
| Mother_Juven | Mother tuber of Juvenile | 236.02 |