Gene detail

Detail information of GWHGAAEX012673/evm.TU.scaffold_44.230

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0839	RNA Methylase, SpoU family
nr	gi\|695069881\|ref\|XP_009381945.1\|	PREDICTED: uncharacterized protein LOC103970039 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|M0RN58\|M0RN58_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P00270_001}
TAIR	AT4G17610	tRNA/rRNA methyltransferase (SpoU) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	5432101	5526648	-

Transcript Sequence
>GWHTAAEX012673 ATGTCGGGCTCCATCAACACCTATCTCGACCCGCTGATAAGAAGCTTTTCCTCTGTTCCCCCTTTATCCGTTCCCGCGATTATTGAATGCGTCCTTGCCTCATCCATGCTATCTGTCTCCAATATGTTGTCATTTCTTCTGCAATCTTTCACAAGCTTCGAGGAGGCCAATAAACCTAATTTCATACTCTGCTATACTAATGCGCTCTGCCATCTTATAAAGAAAGACCGTGCACCAGCTGATACTATGAACCAGTTTATTTCCACGTTCTTTATCCCGCTTCTCAAAGTTATGAACCCAAGTGACTTGGAGTTGCTGAAAGAGATAGAGGATTTCGTGTATCCTTTGGTCCTCGATACTGAATCTTGGGATCTTATTGATAAGACTCTGGTGCCTTTTTGTCTGGGTTCAGTTGGTTATTTGAGGATGGGAACGACATTAGAGGACAATATAGATGCTAGCAAGCACTGCACTGAAAACTCTTCTAAACCTCTGGGAACTTTACCAGGGAAGGCTGCATTACGAATCTTCATTTCTTTGTTAGATTTTTGTTTGAAAAATTGGAGGGGACTTGTAACATCAAAGCAGGAAATACTCACAAAATTCGGTTATTTGCATGCTTTTACTGTGAATTTGACTCGACAGATGTCGAACTTAGCTCTTTTATTGCTCAAATTATCTGTTGAGGATCGTTTTAATGCCATTCATTTGATCCTTCCCAGTGTTTTAGGATCTCTTAACATGCTTTCTGCATTTAAAGTTTTGGAGCATGAGACCCAAATTTCTATCTATAGAGCATGTTTCTTGGAGAAAATGTGGAGCTGTTGTCATTCTCTTTTTCAACTTGGGGAATTAGAAAGGCGAGATGCATACCGGATACTTTCATTGTACTTCTCATCATTTTATGATTTTGTGGGCGATGAAAAGAATGCGGAGATAATTGATGAAAGTTTTGATTTTAGAGGCAATGCAGTAATATGGGAACACACAAAGATAGGATTGGTAGATAGAAATTCTTCTGTGAGGAAGATGGCTTTATACATTTTAAAATCATTGATAAACTATCATTCTTTCTCTGTGTTACGTAGAAATAATCAGCACTTTTTTACCTCTCAACAACCGACTGCAGATGTCAAAAAAGTTGCCTCGTTGCATGATGGTTTGACAAAGAGGGAAAAGTGGGCTGAAAAGGAAGCTAAATCTTTGGGTGTTGGAGAGATTAGTCATCTCGATGGAATATGTTTGAATGGTGCAGAGAGATGGAAGGTCTTTATAATGCTTTATGAGATGCTTGATGAGTATGGCACACATCTAGTTGAAGCTGCTTGGACTCACCAGGTTTCATTATTATTTCAGTTTTGGCCATTGAATCAGGGTTCTACAATCAATAGTGTTTATTATGCTCCAATGGACACTCTAGAAGGCGTTTTATGCTGGTTAACAGTTTTATGGGAGCGTGGATTTTTCCATGAAAATCCTGAAGTGCGAAGATTAATCATGCATTCATTTTTGTCCATTGATTGGAATATTTATGAAAATCATGCGCAAAAAGTGCCCAAGAGTTTTATAATTGGTTCACTTGTTCGAGGTTTAAACGATACTGTGCATCACAAAGGTTTTGGCCTAAAAGGAATTTATATGTCAGGAACAATTGAAGGCGCATCCCAGTATTTTAGAAGAATCTCTAATGAGTTATCTATAAGTGAACGTGCAACACTTGCATGGAGTTTAGCTTCTGCTGCTAGACACGAGTCATTTTGTCGACCTGGATTGATGGCCCTGGCCTTCTGTATTTCTTCAGTTGCTTGCCATGCAAGCCCAATTGACAAGAAGGAAAAGCAAAACTGGGGTTCAAGCTGCGGTGTTGAACTTGTTGATTCTATTGTAATTAGTACTGTTCACACTAGTGCAGTTGAGCTACTGGAGGCCTTAAAAATAGTAATATCAAGAAGTAAACAGCATTTTAATTCAAATTATCGTCAACTAGTTTCTGAACAGATTCTCAAAGCTGCATCTAGCTTGATAAATGTCCATGAAGTTTCACTTGAGGTGTTTCTTCATTTTATTTCAGTATTTCCTCGTGAGTTTATTGATGGAACTGGCTCTTTAAGACCCACACTGCAAGCATGGATAACTAAACGAAACTTTGAAGATGGAAACAATAAGCTAATTGACTGCCGAGCATATCTCTTGAAGAATCTTTTGAGTTTTCCTTCACACTTCATCAAACATAGTTTCACATCTGATGATTTTGTGTCCTTTGATGACGGTGACATTGAGGCATGGCTAGTTAAGGTGCACAGATGGACCTGGATGCTATTCCTTGTAATTCGAGATGAGAATCTGGATTCCATGTTTGAGTTTCTTAATAGCTACTGCTGCAAACTCTGCAAAGATAGTTCTTCAAATTGGGTTCCTATTAAGCTTCTAATTCTTCTTTTGTGTTTAAACGAAGAATCTCAAATTGTTTGGAAAAAATATGTCTTCCAACATGAAACTATGTCTTGGACAGAGCCTATCTGGAGGAATTTGGATGAATCTTCTATTATATCTACTCTTGATGCATCAAAAAAAATTACTGGGCAATTACTACTTGTAGTAGATGAAGTTGTTGCATACGCTAGGCTTGTTTTAACAAAATTCTGGCCGAATTCTATAGCCAAGGACGTTGAGATATCTTCTTCAGTGAGAGGAAAGCTTGGGGGTCCAGCTCAAAGGCGGTTTGATTCTTCTACTACCACTTCTGTTCTTAACTTTATAGTGGCTATGAGGACCATTGCTAGTATGGTTTCAATTTGTTCTCATGCTAAAGGAGAAGTTCTAAATAGTTCGCTTGCCTTCTCCTGGGAATTTGTCTGGAAAGCTGTTCAAATTCAACCTTACAAATCAGAGATAGGATCAGAGCTCTTCTTAGCAACATATGAAGCCTTGGCTTACGTGTTGAAGGCATTGTCTGCTAATTTTGGTCCATTAGACTGTTACTTATTGACAGATAAAAAATCTGAGTTTTTTAATGGAGAAGGAAAACCTCTCTTAGATCATCTATTTCTTTGTTTTCTAAACGGCATAAATGATTTTCTTGCTACTTGTCTTTTAACTCGAAGTCGGCGAGCTGTTTTATTGGATTGGAAGTGGAATTGCTTACACTCTTTACTGTCCATTCCTTATAATGTTCTGGAAAAAGGAATTCATCGAGAAGATGCCTTGCCATTCTTTTCTAGATCAATCATTCAAGGCACTTTGATTGATATATGTGACAGCCTTGAAACTGGAGGTGAAAATTCTGTCTTGTTCATGTTGAGATCTGTGAAGCTGGCTTTAGGCCTTTTGTACTCAAGTAAAGTTGATCCCCCTGTCTCATATTTTAATGGAGTAAACTATCAGATTATGTTACAGTTGGCCAAATCATCTTGGGTTCTACATCTTAGTTGCAACAAGCGAAGGGTGGCACCTATTGCTGCACTTCTTTCTGCAGTGTTGCATGAGTCAGTTTTTGGTGACTTGAAGATGCATGAAATGGATGCTAATGAGAAGGGACCTTTGAAGTGGATTGGAGCAGCAAAGAGATGA

Network for GWHGAAEX012673

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module3

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX012673
MSGSINTYLDPLIRSFSSVPPLSVPAIIECVLASSMLSVSNMLSFLLQSFTSFEEANKPNFILCYTNALCHLIKKDRAPADTMNQFISTFFIPLLKVMNPSDLELLKEIEDFVYPLVLDTESWDLIDKTLVPFCLGSVGYLRMGTTLEDNIDASKHCTENSSKPLGTLPGKAALRIFISLLDFCLKNWRGLVTSKQEILTKFGYLHAFTVNLTRQMSNLALLLLKLSVEDRFNAIHLILPSVLGSLNMLSAFKVLEHETQISIYRACFLEKMWSCCHSLFQLGELERRDAYRILSLYFSSFYDFVGDEKNAEIIDESFDFRGNAVIWEHTKIGLVDRNSSVRKMALYILKSLINYHSFSVLRRNNQHFFTSQQPTADVKKVASLHDGLTKREKWAEKEAKSLGVGEISHLDGICLNGAERWKVFIMLYEMLDEYGTHLVEAAWTHQVSLLFQFWPLNQGSTINSVYYAPMDTLEGVLCWLTVLWERGFFHENPEVRRLIMHSFLSIDWNIYENHAQKVPKSFIIGSLVRGLNDTVHHKGFGLKGIYMSGTIEGASQYFRRISNELSISERATLAWSLASAARHESFCRPGLMALAFCISSVACHASPIDKKEKQNWGSSCGVELVDSIVISTVHTSAVELLEALKIVISRSKQHFNSNYRQLVSEQILKAASSLINVHEVSLEVFLHFISVFPREFIDGTGSLRPTLQAWITKRNFEDGNNKLIDCRAYLLKNLLSFPSHFIKHSFTSDDFVSFDDGDIEAWLVKVHRWTWMLFLVIRDENLDSMFEFLNSYCCKLCKDSSSNWVPIKLLILLLCLNEESQIVWKKYVFQHETMSWTEPIWRNLDESSIISTLDASKKITGQLLLVVDEVVAYARLVLTKFWPNSIAKDVEISSSVRGKLGGPAQRRFDSSTTTSVLNFIVAMRTIASMVSICSHAKGEVLNSSLAFSWEFVWKAVQIQPYKSEIGSELFLATYEALAYVLKALSANFGPLDCYLLTDKKSEFFNGEGKPLLDHLFLCFLNGINDFLATCLLTRSRRAVLLDWKWNCLHSLLSIPYNVLEKGIHREDALPFFSRSIIQGTLIDICDSLETGGENSVLFMLRSVKLALGLLYSSKVDPPVSYFNGVNYQIMLQLAKSSWVLHLSCNKRRVAPIAALLSAVLHESVFGDLKMHEMDANEKGPLKWIGAAKR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	19.370
SRP064423	SRR2545915	Juvenile tuber	19.190
SRP108465	SRR5643513	five period of Gastrodia elata	7.820
	SRR5643514	five period of Gastrodia elata	6.840
	SRR5643515	five period of Gastrodia elata	6.460
	SRR5643524	five period of Gastrodia elata	6.150
	SRR5643525	five period of Gastrodia elata	4.920
	SRR5643528	five period of Gastrodia elata	3.030
	SRR5643658	five period of Gastrodia elata	5.980
	SRR5643659	five period of Gastrodia elata	11.510
	SRR5643660	five period of Gastrodia elata	15.440
	SRR5643661	five period of Gastrodia elata	10.180
	SRR5643662	five period of Gastrodia elata	12.080
	SRR5643663	five period of Gastrodia elata	16.040
	SRR5643664	five period of Gastrodia elata	15.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.150
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	8.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	10.990
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.020
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.420
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	5.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	5.520
SRP279888	Gastro	Gastrodia elata tuber	20.22
	Juven	Juvenile tuber	9.75
	Mother_Gastro	Mother tuber of Gastrodia elata	5.13
	Mother_Juven	Mother tuber of Juvenile	7.06