Gene detail

Detail information of GWHGAAEX012675/evm.TU.scaffold_44.232

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0401	Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G)
nr	gi\|672165231\|ref\|XP_008802512.1\|	PREDICTED: eukaryotic translation initiation factor 4G-like isoform X1 [Phoenix dactylifera]
Swissprot	tr\|G5CEW6\|IF4G_WHEAT	Eukaryotic translation initiation factor 4G
trEMBL	tr\|M0TQJ7\|M0TQJ7_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P14940_001}
TAIR	AT3G60240_1	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000045	5556147	5579240	-

Transcript Sequence
>GWHTAAEX012675 ATGTCCCATAATCAATCAAGGTCTGACAGGACCGAGGGGCATCACCGAAGACCCGGTCGATCAGGCAACTTTGGGCAGAACAGGGGATTCTCCAGCGGCGGAAAGGGCGGTGGCCCCTCCGCCACTGCTCCTGTTCTCCCTCCCTCTTCTGCCCTGCCCCCATCTTCTGCGTCTAATGAGTTTTCGTCAAATCGAAGCGTCAAGAAATCTGTTACTGGACAGGGAGAACAAACTAGGGCTAGTCCAGTTAGTTTGAACTCCGATACTGGAAACCGGGATGTACCAAATGGAGCTCATACATCGACCCCTACTCGTGGGCCGTCGGATGAACTTGAATCAGGCAGTTCCAGGCCAGTGGATTCCTTTAGTAATAAGAAAATTCCCAGAGCACTTCCGAAGGCTCCTGCTGCACATTCTACAGCTGCAAGTTCAGGAGTTGAATCTGGACCTTTTCTTCAGTTTGGGACCATAAATCCTGGTATTATGAATGGAATGCAGGTTCCTGCTAGAACATGCTCAGCTCCACCAAATCTGGATGAGCAGAAACTTGATCAGGCTAAGCATGGTTCAGTTAGGATTGCGCCTGCATTGCCTATACCTTCTGCTACGAAACCACAACAGGTGCCCCAACAACCATCGCCACAGCAACCTCTATTGCAGCAGAAGCAACAAATAAGTGTAAAAGATGTGGGAGCCTTTAATCAAGCTGGCAGCAGGGAATCTCATCCTCCCACACATCCAAAGCGGGATATGCATGTACCCATTACCTCTATTCCCAGTGCTGCACCAGCAAGGCCCTCTGTTCTTACTGTGGGTGGAATGCCAATGCATGTTCCTTTTCAACAGCCACAAATCCCTCTGCAATTTAGTGGCCCCAATTTGCAGATGCCATCACAGGGTATTGTGCCAAGTTCTATGCAAATGACAATGACATTGCCTGCAGGAAATGTTCCCCAAGTCCCTCAACAGTTGTTTGTTCCTAGTATTCAATCTCATCCGCTGCAAACTCCTACAATCATGCACCAAGGACAAGGCTTGGGTTTTACACCTCAATTAAGTCATCAACTGCCTCCTCAGTTAGGCAATATGGGAGTTGGCATTGCCTCACAATTTCATCAACAACAACCTGGAAATTTTGTTTCTCAGCGGAAGGCTGTGAAGATAACTCATCCAGAAACTCACGAGGAACTTAAACTCGATAAAAGAGCCGAATTGCACAGTGATGCTGGCACCGCCGGGCAAAGGCAACTTCCAAATCCCACATCACAGTCCCAGCCTCTTTCAACATTTAATCATCAGATGAACTATTTTCCAACTAATTATAACCATTCCCCAATGTTTTTTCCTTCTTCTCTTCCTATGTCAAGCAACCAGATGTCCACAGGTCCTCAAGCTGCTAGATATGGCTATCCAGTTGGTCAAAATGGGCAAACCATTTCATTCATGAATCCTTCAACTCTAAACTCAACAATGGGTGGCAGATCTGGGCCTCCACTTACATTGCACGGTTTATCAGAATCAGCCAATTTAGAAGTATCGTCAGTTTCAGCATCAATAGCAGCGCCTTCACAAGTAACAATTAAACCTGCTATGCTGCCATCTTCAGAAAAAGTTGGGACACCATCAGTAAGAATTAGCATGCCTGTTAGCAAGCCTGAGTCACCAAAGCAGTCTAAATCATCTGGGGATGTTTCTATTGCTTCTCAGTTGAAGGACAGTGAAGCTGTATCTCAAAATACTGCTGCAATGCAGGATAAAAGTTATGAAGAACCTGCAAGTGATTCTTCTCTAAATGGTAAGAACTTTACCAGATCATCTTCCCTGATTTCAGGACATGTTAACAAGATCGACGCTTCTTCTTTGAGTTCTGCATCTGTTGTGTCTGCGAACGATGGCAGGAAAAAGGATTCTTTAAGACCTGAATCATTGAAGGATCACCAGAGACAAACAAATAAAAGGGAGCCTAAACATTCTCAGCAACAGATAGATGCACTAGAAGATACAGGAAACATGGCTATACAGTCTGCAAAGGTTGATTATGTGGTGGGCAACTATTTGACAGATGCAGTTGGAAATTCACTTTTTAATGATTCTGGAAGCAATGATTCTGCTCCAGCTGTTGATACATTCAACTCTGTGACCAATTTGCATTCTTCAAACAGAGAATCTAGAAATTCTGAACTCAATCAGAAGAAAGATGCAGTGGGAGCTTTAGACTTTTCAAGGGATACATTGGGGGAAAAATCATCTGACATTACTAGTTCAAATTATTCTGATCATGTCGAAGTAGCTGGCGTCAGCGATTCTTTTGATGAGACTGGTATTTTGGAAGTGTCTACTTCAAGTGTTGTTATTGATAGAAATGTATCTATAACTTCTAGCATTTCACTAGACATTTCTAAGACACTGGAAGTTGGACAATTATTAGAAAATTTAACTGAATCAGAATGCAAGGGAGCTGAAGCATCCGATGGTGATTTATCTGGTAGCAGTTCTGTTATTTCTATTTTAACTAGCTTAGAGTCTCCTGATGAACCAGCTGGGGTGCTAATTCTGGATGAGGAAATCGGAGTTTGCTCTCAACATCTTGGCAGTGATAGTGCCCAATTGCATATATTTGAAAAAGAGGGCTGCTCAGTTCAGATGAGCACAGTGGTTTCTAATATGCCAGCCATAAAATTCTCTGATAGTAAAGATACTGAACTTACCCTTTCTGATCAAGTTCCCTTCATTGATACTGATGATGGTAAAATTCCAGCTACTAGTTCTACAGTTCATAAATGTGAAATGTTACATTCAACTAATGCAACTGCAAGTGAACATGATATTTCATTGACAGAGAATGCCCCCACACATTCAGGTTTAGAAATAAAACTTAAAGAGGAAGTTAAAGCTGCAGAGCTTTCTACATCGGTTCAAACACTATCAGGGCTTTCTGGGTTCTTGGACAAGCCCTTAGAGCCAAATCTTGTTAAACCTAACAGAAGGAAGAAGATGAAGGATATTCTTTCAAAGGCAGATGCTGCTGGTTCCTCTGATTTGTATAATGCTTATAAGGGTCCAGAACAGAAGTTAGACACAATCTCTACCTCAGAAACAATGGAAAGTTCTTTAGCTACTGATTCAAAGAATGACATTCTTGAAAATTTTTATAATGCCGATTCTGTTGTTTTGATAGATGAACTTCCCAAAGCTGAGATTGAGGACTGGGAGGACGCTGCTGATGCATCTAATCCCAATTTGAGATCAGAAAATGGTAAGTTGGCTTTAGGGGAAAACAAGATGCATGCTGAATATGTAGATGAGTTCACTGGCAAGAAGAAATATTCTAGAGATTGTTTGTTAGCCTTTTCAGAGCAATGGAAGGATCTTCCTGAAGGTTTTGAAATTGGAGCTGACATAATAGAGATCTTAATGTATGGACAAGCAGGTATGCCCCATGGTATTGACCGTGATACATTACTCAGCCCTGGAAGAATTGTAGATCGATCTATAGGTGTTTCTCGTAGTGACCGGCGTATGGCTGGCATTTTGGATGATGACAGGTGGATGAAAGGGTCCAATGCTTTTCAAATTGATCTTAGTCATGGAACTCCTGCTATGAATGTTCGTCCTGGAGTAGGAGTAAACCAGGGTGTTCTAAGAAACCCGCGAGTGCCGTCGCCCAACCAATTATCTGGTGGAATACTTTCTGGTCCATTGCAATCTTTATCTTCTCAAGGAGGGATAACAAGGAATTATTCTGATGCTGACAGGTGGCAAAGAGCCCCTGGAACTCAAAGAGGCTTGATGCCTCCTCCACTGGGTTCTATGCAAGCAATGCACAAATCGGCTAACAAATATGAAGTTGGAAAAGTGTCTGATGAAGAAGAGCAGAAACAGAGAAGGTTGAAGGCTATATTGAATAAATTAACTCCTCAGAATTTTGAGAAATTGTTTACCCAAGTTAAGGAAGTTAATATTGATAATCCATTGACTCTTACTAAGGTTATCTCTCAAATTTTTGATAAAGCATTGATGGAGCCAACTTTCTGTGAAATGTATGCTGATTTCTGCCACCATCTTGCTAACGAGCTACCTGATTTTGTTGAAAACAATGAAAAAGTTACTTTTAGAAGGCTACTTTTGAACAAATGTCAGGAGGAATTTGAAAGAGAGGAGATAGAAGAAGCTGAAGCTGATAAAATTGAAGAAGAGGGTGAAATACAATCTGAAGCAGGAAGGGAGCAGAAAAGAATCCAGGCTAGAAGGCGAATGCTTGGAAATATTAGGTTAATTGGGGAGCTGTATAAAAAGAAGATGCTTACAGAGAGGATTATGCATGAATGCATCAAGAAACTGTTGGGCCAGTCTCAGAATCCTGACGAGGAGAATATTGAAGCGTTGTGCAAATTGATGAGTACCATTGGTGAGATGATAGATCATTCCAAAGCCAGAGAACATATGGATGTATATTTTGAGGTGATGGCAAAGCTCTCAACAAATCACAAGCTTTCTTCTCGTGTTAGGTTCATGCTCAAGGATACCATTGATCTTAGAAAGAACAAATGGCAGCAGAGAAGAAAGGTTGAAGGTCCAAAGAAGATCGAGGATGTCCATAGAGATGCAGCTCAAGAGAGACAGGCTCAGACTAACAGATCTGCGCGTAGTACTATTATTTCTTCAAAACGAGGACCACCAATTGATTATGGCCACAGACAGCCTACAATTCAGAATGTTCCTAGTTCTCAGCTTCGTGGACTTCCTGGTCAGTTTCGCGGTCCTGGTAGTCAAGATGTTCGTTTGGATGATAAGAATCAGTTTGAGAGCAGGGCGTTATCATCAGTTCCTCTCCCACAAAGGCCTACAGACGTTGGTTCCATTACCCTGGGTCCCCAAGGAGGCCTTGCGAAGGGAATGTCTGGAAGAGGAGGACAGGGACTTGTGTCAAACGTTCCTATTACTGAAATATCTCCCAGAATCAATGATTCTAATCGATTAGCATCTGGTCCCAATGGATTTAGTTCTAGTCATGAACGAATACATTCTTCATCTAGAGAAGAAAGCATGCTTAAGCACCCTACCGATAGGCCAACAGGGGTAACAAATGATCACACAATTATTCAGGATCGTAACCATGGTTGTGGGATTAGGGATTCCCGCCGTGTAGACCGAACACTTGATAGAACTGGGGTTGCTGCCGCCGCCGGGAGGAGGCCTCGTTCTTCAGGTGGCAAATCAAACTCTTCCGAGTCCAAGGTGATCTTATCTGAAGATATTCTGCGAGAGAAGTTGATATCTGCTATACGAGAGTACTATAGTGCCAAGGATGAGAAGGAGGTTGTTCTATGCGTCAGAGACTTAAATACACCAAGTTTTTATCCTTCAATGGTATCACTTTGGGTTTCGGATTCTTTTGAAAGAAAAGATATGGAGAGAAGCCTGCTGTCTCAACTTCTTGTGAACCTAAGCAAGGGTCATGATATTTTGATTAGTCAATCTCAATTGATTGAAGGGTTTGAGTCGGTTCTTTCAACATTGGAGGATGCTGTGAATGATGCTCCCAAAGCTGCTGAATTTCTTGGTCATATTTTTGGAAAAGTAATAGCGGAAAATCTTATTACTCTGGGGGAGATTGGGAGACTGATACGTGAGGGCGGCGAGCTGCCCGGAGCACTTGTTGATGCTGGACACGGGTCTGAGATCCTCGGCAACATATTGGAGTTTTTGAAAAAAGAAAAAGGCGATCCTTTTTTGAACGAGATTCGAAAAAACTCCGGCCTAAAGTTTGAAGACTTTCGACCAACGAACACATCAGCCAAAACAAGGAAGCTGGATGCATTTCTTTAA

Network for GWHGAAEX012675

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02854.18	MIF4G	1294	1516	1.20E-53
PF02847.16	MA3	1755	1867	3.70E-12

Protein Sequence

>GWHPAAEX012675
MSHNQSRSDRTEGHHRRPGRSGNFGQNRGFSSGGKGGGPSATAPVLPPSSALPPSSASNEFSSNRSVKKSVTGQGEQTRASPVSLNSDTGNRDVPNGAHTSTPTRGPSDELESGSSRPVDSFSNKKIPRALPKAPAAHSTAASSGVESGPFLQFGTINPGIMNGMQVPARTCSAPPNLDEQKLDQAKHGSVRIAPALPIPSATKPQQVPQQPSPQQPLLQQKQQISVKDVGAFNQAGSRESHPPTHPKRDMHVPITSIPSAAPARPSVLTVGGMPMHVPFQQPQIPLQFSGPNLQMPSQGIVPSSMQMTMTLPAGNVPQVPQQLFVPSIQSHPLQTPTIMHQGQGLGFTPQLSHQLPPQLGNMGVGIASQFHQQQPGNFVSQRKAVKITHPETHEELKLDKRAELHSDAGTAGQRQLPNPTSQSQPLSTFNHQMNYFPTNYNHSPMFFPSSLPMSSNQMSTGPQAARYGYPVGQNGQTISFMNPSTLNSTMGGRSGPPLTLHGLSESANLEVSSVSASIAAPSQVTIKPAMLPSSEKVGTPSVRISMPVSKPESPKQSKSSGDVSIASQLKDSEAVSQNTAAMQDKSYEEPASDSSLNGKNFTRSSSLISGHVNKIDASSLSSASVVSANDGRKKDSLRPESLKDHQRQTNKREPKHSQQQIDALEDTGNMAIQSAKVDYVVGNYLTDAVGNSLFNDSGSNDSAPAVDTFNSVTNLHSSNRESRNSELNQKKDAVGALDFSRDTLGEKSSDITSSNYSDHVEVAGVSDSFDETGILEVSTSSVVIDRNVSITSSISLDISKTLEVGQLLENLTESECKGAEASDGDLSGSSSVISILTSLESPDEPAGVLILDEEIGVCSQHLGSDSAQLHIFEKEGCSVQMSTVVSNMPAIKFSDSKDTELTLSDQVPFIDTDDGKIPATSSTVHKCEMLHSTNATASEHDISLTENAPTHSGLEIKLKEEVKAAELSTSVQTLSGLSGFLDKPLEPNLVKPNRRKKMKDILSKADAAGSSDLYNAYKGPEQKLDTISTSETMESSLATDSKNDILENFYNADSVVLIDELPKAEIEDWEDAADASNPNLRSENGKLALGENKMHAEYVDEFTGKKKYSRDCLLAFSEQWKDLPEGFEIGADIIEILMYGQAGMPHGIDRDTLLSPGRIVDRSIGVSRSDRRMAGILDDDRWMKGSNAFQIDLSHGTPAMNVRPGVGVNQGVLRNPRVPSPNQLSGGILSGPLQSLSSQGGITRNYSDADRWQRAPGTQRGLMPPPLGSMQAMHKSANKYEVGKVSDEEEQKQRRLKAILNKLTPQNFEKLFTQVKEVNIDNPLTLTKVISQIFDKALMEPTFCEMYADFCHHLANELPDFVENNEKVTFRRLLLNKCQEEFEREEIEEAEADKIEEEGEIQSEAGREQKRIQARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGQSQNPDEENIEALCKLMSTIGEMIDHSKAREHMDVYFEVMAKLSTNHKLSSRVRFMLKDTIDLRKNKWQQRRKVEGPKKIEDVHRDAAQERQAQTNRSARSTIISSKRGPPIDYGHRQPTIQNVPSSQLRGLPGQFRGPGSQDVRLDDKNQFESRALSSVPLPQRPTDVGSITLGPQGGLAKGMSGRGGQGLVSNVPITEISPRINDSNRLASGPNGFSSSHERIHSSSREESMLKHPTDRPTGVTNDHTIIQDRNHGCGIRDSRRVDRTLDRTGVAAAAGRRPRSSGGKSNSSESKVILSEDILREKLISAIREYYSAKDEKEVVLCVRDLNTPSFYPSMVSLWVSDSFERKDMERSLLSQLLVNLSKGHDILISQSQLIEGFESVLSTLEDAVNDAPKAAEFLGHIFGKVIAENLITLGEIGRLIREGGELPGALVDAGHGSEILGNILEFLKKEKGDPFLNEIRKNSGLKFEDFRPTNTSAKTRKLDAFL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03260	EIF4G	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003723	Molecular Function	RNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	69.690
SRP064423	SRR2545915	Juvenile tuber	49.060
SRP108465	SRR5643513	five period of Gastrodia elata	35.250
	SRR5643514	five period of Gastrodia elata	40.660
	SRR5643515	five period of Gastrodia elata	39.560
	SRR5643524	five period of Gastrodia elata	40.010
	SRR5643525	five period of Gastrodia elata	54.540
	SRR5643528	five period of Gastrodia elata	57.770
	SRR5643658	five period of Gastrodia elata	56.430
	SRR5643659	five period of Gastrodia elata	48.120
	SRR5643660	five period of Gastrodia elata	49.060
	SRR5643661	five period of Gastrodia elata	42.410
	SRR5643662	five period of Gastrodia elata	43.460
	SRR5643663	five period of Gastrodia elata	46.880
	SRR5643664	five period of Gastrodia elata	45.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.340
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	45.230
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	42.050
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	43.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.980
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	44.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	47.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	42.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	42.180
SRP279888	Gastro	Gastrodia elata tuber	57.14
	Juven	Juvenile tuber	62.16
	Mother_Gastro	Mother tuber of Gastrodia elata	46.33
	Mother_Juven	Mother tuber of Juvenile	77.08