Detail information of GWHGAAEX012679/evm.TU.scaffold_44.236


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428201607|ref|YP_007080196.1|2.00E-2930S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
nrgi|672112977|ref|XP_008808579.1|2.52E-172PREDICTED: uncharacterized protein LOC103720582 isoform X2 [Phoenix dactylifera]
Swissprottr|P29344|RR1_SPIOL6.00E-2630S ribosomal protein S1, chloroplastic (Precursor)
trEMBLtr|B9SM67|B9SM67_RICCO4.00E-166Putative uncharacterized protein {ECO:0000313|EMBL:EEF35249.1}
TAIRAT1G717207.00E-144Nucleic acid-binding proteins superfamily

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004556426405698417+
Transcript Sequence

Network for GWHGAAEX012679

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00575.22S13544131.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02945RP-S1, rpsA Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.640
SRR2545915Juvenile tuber12.290
SRP108465SRR5643513five period of Gastrodia elata8.000
SRR5643514five period of Gastrodia elata7.680
SRR5643515five period of Gastrodia elata6.890
SRR5643524five period of Gastrodia elata8.080
SRR5643525five period of Gastrodia elata14.240
SRR5643528five period of Gastrodia elata11.710
SRR5643658five period of Gastrodia elata9.630
SRR5643659five period of Gastrodia elata8.810
SRR5643660five period of Gastrodia elata8.830
SRR5643661five period of Gastrodia elata8.280
SRR5643662five period of Gastrodia elata6.780
SRR5643663five period of Gastrodia elata8.040
SRR5643664five period of Gastrodia elata7.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.080
SRR6049655Rhizomagastrodiae_C368-T10_good_15.440
SRR6049656Rhizomagastrodiae_C368-T07_good_17.940
SRR6049657Rhizomagastrodiae_C368-T07_good_111.380
SRR6049658Rhizomagastrodiae_C368-T04_good_19.600
SRR6049659Rhizomagastrodiae_C368-T04_good_17.270
SRR6049660Rhizomagastrodiae_C368-T01_good_18.970
SRR6049661Rhizomagastrodiae_C368-T04_good_18.190
SRR6049662Rhizomagastrodiae_C368-T01_good_18.110
SRR6049663Rhizomagastrodiae_C368-T01_good_18.080
SRR6049664Rhizomagastrodiae_C368-T10_good_19.100
SRR6049665Rhizomagastrodiae_C368-T10_good_19.100
SRP279888GastroGastrodia elata tuber 8.08
JuvenJuvenile tuber12.12
Mother_GastroMother tuber of Gastrodia elata 10.42
Mother_JuvenMother tuber of Juvenile 12.42