Detail information of GWHGAAEX012680/evm.TU.scaffold_44.237
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 9.00E-178 | FOG: PPR repeat |
| nr | gi|743815876|ref|XP_010930473.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g62890-like [Elaeis guineensis] |
| Swissprot | tr|Q9LN01|PPR21_ARATH | 3.00E-178 | Pentatricopeptide repeat-containing protein At1g08070 |
| trEMBL | tr|F6GUC7|F6GUC7_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB43414.1} |
| TAIR | AT1G08070 | 9.00E-178 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000045 | 5710854 | 5712773 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012680
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 48 | 74 | 0.0061 |
| PF01535.19 | PPR | 76 | 102 | 7.60E-05 |
| PF01535.19 | PPR | 108 | 130 | 3.90E-05 |
| PF12854.6 | PPR_1 | 136 | 163 | 5.70E-09 |
| PF13041.5 | PPR_2 | 168 | 213 | 2.90E-12 |
| PF01535.19 | PPR | 243 | 265 | 0.0041 |
| PF13041.5 | PPR_2 | 268 | 317 | 1.60E-08 |
| PF01535.19 | PPR | 344 | 368 | 0.22 |
| PF14432.5 | DYW_deaminase | 443 | 567 | 2.00E-39 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.200 |
| SRR2545915 | Juvenile tuber | 0.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.530 |
| SRR5643514 | five period of Gastrodia elata | 1.720 | |
| SRR5643515 | five period of Gastrodia elata | 1.880 | |
| SRR5643524 | five period of Gastrodia elata | 1.510 | |
| SRR5643525 | five period of Gastrodia elata | 0.320 | |
| SRR5643528 | five period of Gastrodia elata | 0.290 | |
| SRR5643658 | five period of Gastrodia elata | 0.280 | |
| SRR5643659 | five period of Gastrodia elata | 2.260 | |
| SRR5643660 | five period of Gastrodia elata | 1.980 | |
| SRR5643661 | five period of Gastrodia elata | 2.250 | |
| SRR5643662 | five period of Gastrodia elata | 1.830 | |
| SRR5643663 | five period of Gastrodia elata | 2.080 | |
| SRR5643664 | five period of Gastrodia elata | 1.470 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.670 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.730 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.750 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.750 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.21 |
| Juven | Juvenile tuber | 2.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.29 | |
| Mother_Juven | Mother tuber of Juvenile | 1.20 |