Gene detail

Detail information of GWHGAAEX012682/evm.TU.scaffold_45.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|118431257\|ref\|NP_147591.2\|	1.00E-11	thermosome alpha subunit [Aeropyrum pernix K1]
KOG	KOG0230	0	Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins
nr	gi\|672120212\|ref\|XP_008783365.1\|	0	PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X3 [Phoenix dactylifera]
Swissprot	tr\|Q9XID0\|FAB1D_ARATH	0	Putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D
trEMBL	tr\|Q6ZJN4\|Q6ZJN4_ORYSJ	0	Phosphatidylinositol 3,5-kinase-like {ECO:0000313\|EMBL:BAD08926.1}
TAIR	AT1G34260	0	FORMS APLOID AND BINUCLEATE CELLS 1A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	79118	101332	-

Transcript Sequence
>GWHTAAEX012682 ATGCTTTGCCCTGCTTCAGGTTATAGGTGTGCCTTTTACTACATCGATTGGGTTCTGAACTTCTGTTGCTGTCGCGAGTTAGGTCATTGCTTGTATAGTGTTAACAAGAAATGGAATGTTATCTTTTTGTATGTGCTACATTACTTTAAGCTGTCAAGTTTCATTGGTAAGTCATCAACTGAGATGAATTCATACGTCAGGGAAAATGGAGATGAAGCTGTAGATATTCATTTAGAACAAACGAAGAGATTTTTTAAACATGACGTAGCTCGAAGTAGGGTATTTTCAGAGGTTTTCAGTGCCCCAATATCTGATATTACAACTGGATTGGATAGAACTGGGGAGGGGATGCTTTCAGTAGAAACTTTTAGATCAAGAACCTTTACACCTGAAAATTCTGAGAATGATAAAGACGAGAGGCTTCATTATATTGACTACAGTCAGGAAGATAATTTATCTGCTGAAATAAGGACTGGGGATGATCCAGTTAAGGTTGGTATTTCCATAAATAGTTTATCAGTTTTGTCTCTTTTGAAAACAGACCCTCTCATCTGGAGGCCACCAGAACCAGCAAATGTTGAGGATGACATGGATAGTATCACAAATAATGATGATGATGATGATGATGATGACTATAGAGATGGCATGAAATGGGGCCAGTCTTCTTCTTTAGGTGATTTTGACAAAGTTCATGGAAGTAGCTACAAGGAAGCACGCCAAAAAGCAATGATGACAGCTATGAATGGGCAATTTAAGATCCTTGTTAGCCGGTTCTTGGCATCAGAAGGACTCACATCACTCACATCAGCTCTTGACGGCAATGATCCGGGTTGGCTTGATATTGTTACTTCTTTGTCATGGGAAGCTGCACTTTTTATTAAGCCTGATGCAAAAGAGGGAAGAGCAATGGATCCAGGGTTCTACGTGAAAGTAAAATGTGCTGCAACTGGTATTCCAAATCAAAGCCAGGTGATTAAGGGTTTAATTTTTAAGAAAAATACTGCACACAAGCACATGCCAGTAAAATGCAAAAATCCAAGGCTTCTACTGGTCAAGGGGGTCCTTGGGCAGCGTGAGCTTGGGTTATCATCATTTAATTCAATGGATCAGGAAAAAGACTACTTGAAGATGGTCAATGAGATGATAGAAGCTTGCCATCCTAATTTGGTATTGGTGGAGAAATCTGTTTCACGTGACATACAGGAGTTTTTGCTTGCAAAGGGAATGACGTTAATATTTGATATGAAAATTGCACGTTTGGAAAGAATCTCTCGCTGTACTGGTTCTCAGATTATTCCTTCTGCTAATATTTTGACAAACCGAAATGTCACTCACTGTGACTTATTTCATATTGAAAAATTAGTTGAGGAACATAACAATTCTAGTGAACTTGGAAAAAAGGCGAGCAAAACTTTGATGTTTCTGGAGGGTTTTTCCAAACCCTTGGGATGCACGATATTGCTTAAAGGGGCTCATATTGATGAACTGAAGAGAGTTAAGCGAGTTATTCAATACACCATCTTTGCAGCCTATCATTTGATACTGGAAACATCATTTTTTGCTGATCAAAGAGCTTTGTTCTCTGACTTGGATAGCACAGAAGTCGACAAGGCAACAACTGATAAATCAGTGCCAACTACTGCTTTTGAAGATGCACCAAGCTTAAATTCATCTTCTAATATTTTTGCTTCTGAAAATGTATTTTTGGAAAATTCGGCTAATGAAGGGTTTTACAACGCACATCTTGATGCCAGCCGACAGTTGGGTGACTTGGGATATGTTTGTGATGCTGATTTCAGTGAAGACAACTTCACTCAAGGAAGTCTCCCCAAGAATTTAATTAATGAAAATGCAGAAGCGAATCTATCAAGCTTACTATCACCCACTGAATTTTCTATGCAGCTAATGTCTTCTTTCTCCACCTCACTTAGTAAATTACTATCAGATAAACAGCTGAAGCCATATTCATCTGAGTCCGTTTCATATTTATTTGGCTTTAAAGAAGAGGAACATGAATATCCAAGTTTGAATGTTGGACCCATTTCTTCATCTACAGAGAGTATGGGTGATGGGATAGAAGCAACCGAAAACATTATGGCAGAGAAGCTGAATTACAATTTTTTTAACATTGAAAAGTCGGAGGCCTTTTCAACATCGAATGAACAAGTTCAGCCCTCAACTGCAATGACCACAAACAAATTTGAAGTTGAAGGAAAGGATGACAGCGATGGTGTATTGAGTCCTGAGAGCATATTGGTTCTATTGTCCAGTCAGTGTATTGAAAAAGGGCTTGTTTGTGAGCAGAGTCATCTTTCTCGCATAAAATATTATGGAACTTTTGATGTCTCTCTGGGACGTTACCTTCAAGATGTCTTACTCAACCAGAAACATGCTTGCTCTTCATGCGGTGAATCACCTGATGCTCATATTTACTGTTATACCCACCAAAATGGAAATCTTACAGTTCTAGTTAGACAACTTTCTTCCAGCGATACATTATTAGGGGAAGCAGAGGGGAAAATTTGGATGTGGAGTAGATGTTTGAAATGTGAGGATGAAAATGGAGTTCCAAGATCTACAAAGAGGGTTGCCATGTCTGCAGCAGCTAGAAGTCTATCTTTCGGAAAGTTCTTAGAGCTCAGCTTCACCAGCCATTCCGCAGCAAGCAGGATATCTTCTGAATGTGGGCATTCACTTCATAGAGATTGCCTTCGCTTTTTTGGATTGGGTTCCAAAGTTGCGATGTTCAGATATTCACCAGTTGAAATTTATGCTGCTTGTAAGCCGCCATCAGTGCTTGATTTTGCTGTTCCAAATGGACAAGATTGGGTTGTGCAAGAAGCAAAATCTGTGCTTCAAAGAGGAGATATATTTTACTCCGAGGTGGCAAACTTCCTGCGCAATTTAAAGACAAGTTATCTTTATTCTTTCTCAGATCTAAATAAAAGCATTTCAGGCTTTGTTAAAAACATATGCGAAGCAGAAGACATGTTAAACCATGAAAAAGCGGAATTTGAGGCTTCTTTGTTCAAAGCTGTCAACCATGCTGGGCAGCATGAGAAGTCCGCGAGTGAGATTCTGGGCTTGAGTTGGTTTAATCAGGAACTGCTTCTCGGGCTTTATGTTTGGGACGGTCGTTTGCATCAGCTTTCACAAATTGGCAAAGCTTTTGACAGATCAACTGATGAAAATGAAAGATGCATTGAGAATGGAAGCATAGAATATGATGATATATCTTCTGGAGCCCCAAATCATTTTATCGCACATAATTTTTTGCAGCGATCCGCTTGTGATGCAGCCTACCACAGCAACCCTGGCCTTGATGAGATGGAATGCTCAATAGAAGCAGCTTCATTTTTCGATCCGTCTGCTGCAGAATGTGTACTAAACAACACTCAACGAAACGCTTTAGGCGAGGAGTTTGAGGCTGAAAGTGCCGCCAATGTTGACATAATATCTGATTTCGAGATGGTGAATGAAATTTCTATAAGAAAAAATGGATCATTCTTCCCTTCGACATTGAAGGGACATCATTCGAGCATTGGGGTATTCAGGGATTCCCCTTTACTGAACCTTGAATACCCTGAGAGCTTGATTTGGGTTTCTTTCTCTGAGCTCCGTGGCACATTTAAAAGAGACCTAGACAGCGGCTACCTGCAGAAGTTTTCATTTGTTCGCTCCTACACTCCAAAATACCTGAGCCCTATGCATCAGCTGTTTCCCCAAGAACGGGGCTTGCTGCACTACCCAGTTGGCACAAAAAAGGTCATGTCCGTATGCGAGGATGAAATATCCAGCATAATTGCCTGTGCACTTGCACTCTCCGAGGACCAGAATTGTTCGCCTGAAGCTGTGGACGCATTTGAAGGAAAAATGGAGGCGGATAAAGAACTCGATAATCCATCATCCAGTGTCATCTCAGACGGCTCGGTAGCTTCGTCCAACGGATCTTCCGATTCCTTAGGAATGAATTTTTCACGAAGCTTCTCATTGCTCTACTCTGACGATGCCTCCGAAGGTGCATCGTCCGTGGATCATTTGTTGACCGCCTCTGAAAACCTTCATCCTGAGATCCCGCTGGGCATTGGAAAAGAAGGATTGAAGAGGTATTCGGTTGTCTGCATCTATGCGAAGCAGTTTTATGCACTTCGGAGGATGTGCTGCCCTTCGGAACAGGCTTATATTATTTCCCTGAGCCGATGCAGGAAGTGGGATGCTCAGGGTGGGAAAAGCAAAGCCTTTTTTGCCAAGTCTATGGACGACCGTTTCATCATTAAGCAGATCAAGAAGGCAGAGCTCGATTCCTTCCTTAAGTTTGCGCCTGATTATTTCAAGCACATCACGCACTCCCTAAGCACTGGGAGCCAAACATGCCTTGCAAAAATCCTGGGAATATATCAGGTTCGGGTAACTCGAGGTGGTAAAGAAGCAAAGATTGATCTGATGGTGATGGAAAACCTTCTCTTTGGTCGCAACGTGACACGAACGTATGATCTGAAAGGTGCCATCTTATCCCGATACGTGTCGGGCGTAAACGGAGGCCAAGAGAAGGTTCTCCTTGACCAGAACTTTGTGGAGGATATGCGCTTATCTCCGATTTATGTAGGTGGGAGGACAAAACATCTTCTGCAGCGAGCGATCTGGAACGACACCTCCTTCCTCAATGCGATCAATGTCATGGATTATTCGCTCCTTGTAGGGGTGGATAAGAAGCAGCAGCAGATAGTGTTTGGCATAATTGATTATTTGAGGCAGTATACATGGGACAAACAGCTTGAGACGTGGGTGAAGGCGTCCCTTGTTCCCAAAAACTCTTTACCAACTATTATATCCCCAAAAGAGTATAAGAAGAGGTTCAGAAAATTCATGGCCAGATACTTCCTGACTGTTCCTGATTCCTGGTGCTCTGCAGAGAGTGCAGATTAGCCTTGCTAATTTATTGAACTTTATTTTTGAAGGGTTCAGAGCTTTGGCAGCCAGGTGCTTAATTTTTTTGTTTTTTTGTTTTTATAATTTGTTATTCTCATCAGTTTTATATTAAACTGATGTTAGGGTTAAGTCAGCAGCACAAACTTTAGTGCATGCGCCTGTATTCTTTCTCTCCACTGGGTTTTGTATTGTGGCTTTGCAGTAACTGTATATAAATCATCTGTCAAAACAATTACCCAAGTTTGCAATTTTTAAGCAAATCATTGGGTAAGTTGTTTGCTGATGATAGCAAGTGTGATTAATGTGTATCTAATATAGAACGATTTGTTATATATAGATTTTATATGAAACGCTGCTCATATGTGCTTCACTTTGGATGAAAGTTTAATTAGTATTACGGATTAAGTTATATATTGAGTGCATGATTTTTGTGGGGCAAAACTTGTATTGGTTGTTT

Network for GWHGAAEX012682

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.23	Cpn60_TCP1	266	514	8.70E-22
PF01504.17	PIP5K	1407	1573	2.60E-37

Protein Sequence

>GWHPAAEX012682
MLCPASGYRCAFYYIDWVLNFCCCRELGHCLYSVNKKWNVIFLYVLHYFKLSSFIGKSSTEMNSYVRENGDEAVDIHLEQTKRFFKHDVARSRVFSEVFSAPISDITTGLDRTGEGMLSVETFRSRTFTPENSENDKDERLHYIDYSQEDNLSAEIRTGDDPVKVGISINSLSVLSLLKTDPLIWRPPEPANVEDDMDSITNNDDDDDDDDYRDGMKWGQSSSLGDFDKVHGSSYKEARQKAMMTAMNGQFKILVSRFLASEGLTSLTSALDGNDPGWLDIVTSLSWEAALFIKPDAKEGRAMDPGFYVKVKCAATGIPNQSQVIKGLIFKKNTAHKHMPVKCKNPRLLLVKGVLGQRELGLSSFNSMDQEKDYLKMVNEMIEACHPNLVLVEKSVSRDIQEFLLAKGMTLIFDMKIARLERISRCTGSQIIPSANILTNRNVTHCDLFHIEKLVEEHNNSSELGKKASKTLMFLEGFSKPLGCTILLKGAHIDELKRVKRVIQYTIFAAYHLILETSFFADQRALFSDLDSTEVDKATTDKSVPTTAFEDAPSLNSSSNIFASENVFLENSANEGFYNAHLDASRQLGDLGYVCDADFSEDNFTQGSLPKNLINENAEANLSSLLSPTEFSMQLMSSFSTSLSKLLSDKQLKPYSSESVSYLFGFKEEEHEYPSLNVGPISSSTESMGDGIEATENIMAEKLNYNFFNIEKSEAFSTSNEQVQPSTAMTTNKFEVEGKDDSDGVLSPESILVLLSSQCIEKGLVCEQSHLSRIKYYGTFDVSLGRYLQDVLLNQKHACSSCGESPDAHIYCYTHQNGNLTVLVRQLSSSDTLLGEAEGKIWMWSRCLKCEDENGVPRSTKRVAMSAAARSLSFGKFLELSFTSHSAASRISSECGHSLHRDCLRFFGLGSKVAMFRYSPVEIYAACKPPSVLDFAVPNGQDWVVQEAKSVLQRGDIFYSEVANFLRNLKTSYLYSFSDLNKSISGFVKNICEAEDMLNHEKAEFEASLFKAVNHAGQHEKSASEILGLSWFNQELLLGLYVWDGRLHQLSQIGKAFDRSTDENERCIENGSIEYDDISSGAPNHFIAHNFLQRSACDAAYHSNPGLDEMECSIEAASFFDPSAAECVLNNTQRNALGEEFEAESAANVDIISDFEMVNEISIRKNGSFFPSTLKGHHSSIGVFRDSPLLNLEYPESLIWVSFSELRGTFKRDLDSGYLQKFSFVRSYTPKYLSPMHQLFPQERGLLHYPVGTKKVMSVCEDEISSIIACALALSEDQNCSPEAVDAFEGKMEADKELDNPSSSVISDGSVASSNGSSDSLGMNFSRSFSLLYSDDASEGASSVDHLLTASENLHPEIPLGIGKEGLKRYSVVCIYAKQFYALRRMCCPSEQAYIISLSRCRKWDAQGGKSKAFFAKSMDDRFIIKQIKKAELDSFLKFAPDYFKHITHSLSTGSQTCLAKILGIYQVRVTRGGKEAKIDLMVMENLLFGRNVTRTYDLKGAILSRYVSGVNGGQEKVLLDQNFVEDMRLSPIYVGGRTKHLLQRAIWNDTSFLNAINVMDYSLLVGVDKKQQQIVFGIIDYLRQYTWDKQLETWVKASLVPKNSLPTIISPKEYKKRFRKFMARYFLTVPDSWCSAESAD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00921	PIKFYVE, FAB1	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name
GO:0046488	Biological Process	phosphatidylinositol metabolic process
GO:0016307	Molecular Function	phosphatidylinositol phosphate kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	41.210
SRP064423	SRR2545915	Juvenile tuber	43.170
SRP108465	SRR5643513	five period of Gastrodia elata	23.240
	SRR5643514	five period of Gastrodia elata	29.190
	SRR5643515	five period of Gastrodia elata	34.370
	SRR5643524	five period of Gastrodia elata	29.610
	SRR5643525	five period of Gastrodia elata	68.960
	SRR5643528	five period of Gastrodia elata	77.030
	SRR5643658	five period of Gastrodia elata	72.660
	SRR5643659	five period of Gastrodia elata	22.090
	SRR5643660	five period of Gastrodia elata	22.040
	SRR5643661	five period of Gastrodia elata	21.470
	SRR5643662	five period of Gastrodia elata	29.090
	SRR5643663	five period of Gastrodia elata	25.570
	SRR5643664	five period of Gastrodia elata	23.110
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	21.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.780
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.650
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.210
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	20.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.050
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.980
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.980
SRP279888	Gastro	Gastrodia elata tuber	23.07
	Juven	Juvenile tuber	22.93
	Mother_Gastro	Mother tuber of Gastrodia elata	95.14
	Mother_Juven	Mother tuber of Juvenile	90.35