Detail information of GWHGAAEX012688/evm.TU.scaffold_45.13
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|256823263|ref|YP_003147226.1| | 3.00E-145 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase [Kangiella koreensis DSM 16069] |
| KOG | KOG0022 | 0 | Alcohol dehydrogenase, class III |
| nr | gi|720087071|ref|XP_010244039.1| | 0 | PREDICTED: alcohol dehydrogenase-like [Nelumbo nucifera] |
| Swissprot | tr|P14674|ADH2_SOLTU | 0 | Alcohol dehydrogenase 2 |
| trEMBL | tr|F6I0F6|F6I0F6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60422.1} |
| trEMBL | tr|F6I0F6|F6I0F6_VITVI | 9.00E-130 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60422.1} |
| TAIR | AT1G77120 | 0 | alcohol dehydrogenase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 622801 | 626570 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012688
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08240.11 | ADH_N | 37 | 163 | 1.70E-22 |
| PF00107.25 | ADH_zinc_N | 206 | 333 | 1.40E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 231.790 |
| SRR2545915 | Juvenile tuber | 227.330 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 420.490 |
| SRR5643514 | five period of Gastrodia elata | 303.570 | |
| SRR5643515 | five period of Gastrodia elata | 537.600 | |
| SRR5643524 | five period of Gastrodia elata | 416.590 | |
| SRR5643525 | five period of Gastrodia elata | 350.150 | |
| SRR5643528 | five period of Gastrodia elata | 461.170 | |
| SRR5643658 | five period of Gastrodia elata | 336.320 | |
| SRR5643659 | five period of Gastrodia elata | 213.360 | |
| SRR5643660 | five period of Gastrodia elata | 162.520 | |
| SRR5643661 | five period of Gastrodia elata | 212.680 | |
| SRR5643662 | five period of Gastrodia elata | 314.080 | |
| SRR5643663 | five period of Gastrodia elata | 231.930 | |
| SRR5643664 | five period of Gastrodia elata | 227.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 254.800 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 199.070 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 227.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 210.730 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 179.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 183.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 196.020 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 174.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 177.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 202.300 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 314.530 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 314.530 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 275.60 |
| Juven | Juvenile tuber | 859.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,806.39 | |
| Mother_Juven | Mother tuber of Juvenile | 2,805.61 |