Gene detail

Detail information of GWHGAAEX012689/evm.TU.scaffold_45.15

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|15966499\|ref\|NP_386852.1\|	2.00E-21	glycosyl transferase (sulfolipid biosynthesis) protein [Sinorhizobium meliloti 1021]
KOG	KOG1950	0	Glycosyl transferase, family 8 - glycogenin
nr	gi\|743816382\|ref\|XP_010930628.1\|	0	PREDICTED: putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 [Elaeis guineensis]
Swissprot	tr\|Q9LSB1\|GUX1_ARATH	0	UDP-glucuronate:xylan alpha-glucuronosyltransferase 1
trEMBL	tr\|J3L6F2\|J3L6F2_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB01G48080.1}
TAIR	AT3G18660	0	plant glycogenin-like starch initiation protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	689123	725057	-

Transcript Sequence
>GWHTAAEX012689 AAATTCATTTAAATATATATAATATAGAAGAAATGTGCAGCTCCGTCTGCTGCTCATCTTCCAATTTCCATAAACCTATCAAAACATTTTTGGCTACTGTTCATCTTCTTCCCCCTGACGATCAAGAAGAAAGCAGGCATGGGAAGATTTACTTATTTTGTCGACGGCAGGCGTCGATTGGCCAGAAGTCTTTCTGATGCAAGCCCGAGAGCAAAGCACAAAGACAATAATAGCCCCAAAGGGACTGAAAAGTTAGTAAGCTGTAATCAAGAAAACATGTACGGGTGGAGGCTAAGATGGCTGAAATGCTTCATTGCATTCTTTATGTTCGGAACTCTATATGCATTTCTTCATTCAACAATCAAGTGTCGTGAAACAAGTTCCATCGGTCCTCTTAGGCCCAGTGCTTCAGGCGTTAAATGGATGGGAAGTGAAGCAATTCCCGATCCCAGATACGCGTCAGGCACAGACATCAAGTGGCCCCAAATAATGCAAATCCTATCAAAAATAAATGGAATGGAAAGCCTGCGGATTGGATTGCTGAACTTCCACAGCAGCGAGATGAACAGGTGGCGGACTCTGTTTCCTGCTGCAAAAATTTCAGATATTCATTTGGCAAAAGCAGAAAAAAATCTAACTTGGGAGGAACTGTATCCGGAGTGGATTGACGAAGAAGACGAATCAGAAGTTCCTTCCTGCAAGAATCTGCCCAATCCGACGGTTGAGAAAGAGTCAAAGTTTGGGCTGGTTGGGGTGAAGCTGCCATGCAATAAGGCCGGGAACTGGACAAGGGATGTAGCCCGGCTTCATCTGCAGCTTGCAGCAGCCAGACTTATTGTTTCAGATTCTGCACAAGAAGAAGACTACAGTGCGTATGTTCTTATTGTGACAGACTGCCTTCCCATACCAAACCTCTTCTCATGCAAGCATCTTGTCGCCAGAACGGGAAATGGTTGGCTATACAAGCCTGACCCGCGCAATTTAGAACACAAACTCCTGCTTCCCGTCGGGTCATGCCAGCTTTCGCTCCCGCTTAGGCAGACAGAAGCGCGGAAGCAGCTTTCCTCAGATGTGAGGCGAGAAGCATACGCGACGATTCTGCACTCTGTGGACGTGTACGTGTGCGGCGCGATCGCGGCAGGACAGAGCATACGGCTGAGCGGATCGACCAGAGACCTGGTAATCCTGGTGGACGAGGCCATCAGCACTCACAACAGAAGGGGCCTCGAAGCCGCGGGCTGGAAGATCAAGAAGATGCGCAGGATTCGGAACCCCAAGGCCTCCAAAAACGCTTATAACGAGTGGAATTACAGCAAGTTCCGGCTTTGGCAGCTCACCCAATACTCCAAAGTCATTTTCATTGACGCCGACCTTCTCGTCCTCAGAAACATCGACTTTCTCTTCTCCATGCCTGAGATCAGTGCGTCCGGAAACAACGGTACTCTCTTCAACTCCGGCGTTATGGTCATCGAGCCGTCCGCCTGCACCTTCAGCCTCCTGATGGATAACATCCATGCCGTCGATTCTTATAACGGCGGAGATCAGGGTTATCTCAACGAGATCTTTACCTGGTGGCACAGAATCCCCAGGCGGATGAATTTCCTCAAGCATTTCTGGAGCGGGGACTCCCAGGAGAAGAAGGATCTCAAGAATGGGCTCTTCGAAGCGGAGCCTCCTGTTCTGTATCTGATTCATTATTTGGGGCTCAAGCCCTGGCTCTGCTTCAGGGACTATGACTGCAACTGGAATGTCGATTTTATGCGAGAGTTTGCCAGCGATGTGGCGCATAAGAGGTGGTGGGATGTCCATGATTTGATGCCTAAAACGTTGCACAAGTTCTGCTTCTTGAGCACACGCAGGAAGGCGGGCTTGGAGTGGGATAGAAGGCTTGCTGAGAAGAAGGGGTTTTTGGATGGACATTGGAAGACCAACGTCAGCGATTCCAGGCTTAGTTTATGTAGAAATCGGAACTGTGATTGGAAAGCTATGCTGCTGCACTGGAAGGATACAAGGTATGCTAATCAGAGCCTCAGTTTCAAAAGGGACACACTGAAGAGAAACCTCTCTACTGTTTGAAATGTATCGTGTTGTAAATTTGATGCAAGTACTCGATGTTTAAACACATACGAAAGTTACAAGATATTGTAATTCTGAATCTTGGTGCAGTCCTTGAAATGTAATTGTGTTTGCCTTTTGTATTTGCCTAAAACAAGCCGACAATTTTTCATGATGTATACGAGCATCGCGGTTCAAATATCAAAACCGGCTGTGATCT

Network for GWHGAAEX012689

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.19	Glyco_transf_8	325	527	1.70E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016757	Molecular Function	transferase activity, transferring glycosyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.290
SRP064423	SRR2545915	Juvenile tuber	18.980
SRP108465	SRR5643513	five period of Gastrodia elata	13.850
	SRR5643514	five period of Gastrodia elata	10.560
	SRR5643515	five period of Gastrodia elata	11.260
	SRR5643524	five period of Gastrodia elata	13.890
	SRR5643525	five period of Gastrodia elata	31.490
	SRR5643528	five period of Gastrodia elata	21.460
	SRR5643658	five period of Gastrodia elata	36.400
	SRR5643659	five period of Gastrodia elata	6.710
	SRR5643660	five period of Gastrodia elata	7.900
	SRR5643661	five period of Gastrodia elata	8.450
	SRR5643662	five period of Gastrodia elata	5.240
	SRR5643663	five period of Gastrodia elata	4.790
	SRR5643664	five period of Gastrodia elata	5.950
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	9.580
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	7.250
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	6.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	6.230
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	9.960
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.870
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.560
SRP279888	Gastro	Gastrodia elata tuber	6.99
	Juven	Juvenile tuber	7.53
	Mother_Gastro	Mother tuber of Gastrodia elata	19.29
	Mother_Juven	Mother tuber of Juvenile	16.66