Detail information of GWHGAAEX012696/evm.TU.scaffold_45.24
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-163 | FOG: PPR repeat |
| nr | gi|672128406|ref|XP_008787689.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g62370 [Phoenix dactylifera] |
| Swissprot | tr|Q9LVA2|PP443_ARATH | 2.00E-163 | Pentatricopeptide repeat-containing protein At5g62370 |
| trEMBL | tr|I1I597|I1I597_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G30440.1} |
| TAIR | AT5G62370 | 8.00E-163 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 1134298 | 1159593 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012696
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 131 | 156 | 0.0075 |
| PF01535.19 | PPR | 201 | 229 | 0.00045 |
| PF01535.19 | PPR | 236 | 265 | 0.00046 |
| PF01535.19 | PPR | 272 | 299 | 5.50E-06 |
| PF13041.5 | PPR_2 | 303 | 348 | 5.40E-15 |
| PF13812.5 | PPR_3 | 362 | 418 | 0.00033 |
| PF13041.5 | PPR_2 | 479 | 526 | 2.20E-11 |
| PF01535.19 | PPR | 552 | 581 | 0.01 |
| PF01535.19 | PPR | 587 | 616 | 0.0011 |
| PF13041.5 | PPR_2 | 618 | 667 | 7.70E-13 |
| PF13041.5 | PPR_2 | 688 | 736 | 2.10E-12 |
| PF13041.5 | PPR_2 | 803 | 849 | 2.10E-12 |
| PF12854.6 | PPR_1 | 870 | 898 | 9.60E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.080 |
| SRR2545915 | Juvenile tuber | 4.590 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.180 |
| SRR5643514 | five period of Gastrodia elata | 2.360 | |
| SRR5643515 | five period of Gastrodia elata | 1.990 | |
| SRR5643524 | five period of Gastrodia elata | 1.550 | |
| SRR5643525 | five period of Gastrodia elata | 2.230 | |
| SRR5643528 | five period of Gastrodia elata | 1.900 | |
| SRR5643658 | five period of Gastrodia elata | 2.030 | |
| SRR5643659 | five period of Gastrodia elata | 2.990 | |
| SRR5643660 | five period of Gastrodia elata | 3.520 | |
| SRR5643661 | five period of Gastrodia elata | 3.500 | |
| SRR5643662 | five period of Gastrodia elata | 2.780 | |
| SRR5643663 | five period of Gastrodia elata | 3.040 | |
| SRR5643664 | five period of Gastrodia elata | 2.850 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 2.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.410 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.78 |
| Juven | Juvenile tuber | 4.28 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.73 | |
| Mother_Juven | Mother tuber of Juvenile | 3.00 |