Gene detail

Detail information of GWHGAAEX012705/evm.TU.scaffold_45.38

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|226226329\|ref\|YP_002760435.1\|	8.00E-33	putative serine/threonine protein kinase [Gemmatimonas aurantiaca T-27]
KOG	KOG0583	0	Serine/threonine protein kinase
nr	gi\|743851901\|ref\|XP_010940254.1\|	0	PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q38997\|KIN10_ARATH	0	SNF1-related protein kinase catalytic subunit alpha KIN10
trEMBL	tr\|M1HEQ0\|M1HEQ0_MUSPR	0	SNF1-related protein kinase catalytic subunit alpha KIN10-3 {ECO:0000313\|EMBL:AGE44294.1}
TAIR	AT3G01090	0	SNF1 kinase homolog 10

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	1677308	1691150	+

Transcript Sequence
>GWHTAAEX012705 AGCCGGTAAACTCTTCCCACTTTCACTTTACGAATCTTCTCCTTTTTACTCTTTTTTTAATCTTCGTTATCTTGCCCGATAAAGCAAAACCCTAGCCGGCCCTTGTGTCCAAATCAATATCTCCCATGTTTGTTTCTGCCTTGGTTTTCTTTGTTATTGATAAAAGTCATCCTAAAATGCCCAATCATCTTTGCTTTTTTCACTTGTTTACAATGCATAGTATATCCATTGCCGTCCATATCTCCTTTTAGATCTGATGAGCAGCGATTAAGTCGAATAATAGCTTATCTCAACTATTGATATTCCTTGGAAAACTTTTTCGTTTTATCATTGTGAATCTCTTGTGAGGATTTCCAGTTTGAAACAACCTTGTGGCCTCATATAATTAGGAAAAACCTTCCATACTGCTCAGTATGTGCAGGAGAAATCTGATGAATAAGAAAAAATTTGTCTGTGTTTATTTATTATGCACATAAAGGAGGCTCAGTTTTGATTTATGAAGTGTTGGCCAACATGGATGGTGGGTCTAGCAGAGGTGGCACTAGTGCTGAAGTGATATTACCCAACTACAAGCTTGGGAAAACTTTGGGAATTGGCTCTTTTGGCAAAGTGAAAATTGCAGAGCATGCCTTAACAGGTCACAAGGTTGCTATAAAAATTCTCAATCGTCGGAAAATAAGGAATATGGAAATGGAAGAAAAAGTTAGAAGAGAGATTAAAATACTAAGATTATTCATGCATCCTCATATTATACGCCTTTATGAGGTTATAGAGACACATTCAGATATTTATGTTGTAATGGAATATGTGAAATCTGGTGAACTTTTTGATTATATTGTTGAAAAGGGGAGATTGCAAGAAGATGAAGCTCGACGTTTTTTTCAACAGCAGATTATATCAGGTGTTGAGTACTGCCACAGAAATATGGTAGTACATCGAGATCTCAAGCCAGAAAACTTGCTTCTGGATTCGAAATGCAATGTTAAAATTGCAGACTTCGGCTTGAGCAATATCATGCGTGATGGCCATTTTCTAAAAACTAGTTGTGGGAGTCCCAATTACGCAGCTCCTGAGGTTATATCCGGTAAACTATATGCTGGACCAGAAGTTGATGTTTGGAGTTGTGGCGTTATTCTCTATGCTCTTCTTTGTGGAACTCTTCCTTTTGATGATGAAAACATACCGAACCTCTTTAAAAAAATAAAGGGTGGAATATATACTCTTCCTAGTCATCTTTCTTCTTTAGCTAGAGACCTGATACCAAGAATGCTTGTTGTTGATCCAATGAAGAGAGTGACTATTCGTGAGATTCGTGAACATCCGTGGTTCCAGGCTCGTCTTCCCCGCTATTTGGCTGTGCCTCCTCCTGATACAATGCAGCAGGCTAAGAAGATTGATGAAGAAATTCTTCAGGAGGTTGTTAAAATGGGATTTGAGAAGAACCAGTTGGTTGAATCTCTTCATAACAGAATTCAAAATGAGGCGACTGTGGCATATTATCTGCTTTTAGATAATAGGTTTCGAGTTGCCAGTGGCTATCTAGGAGCTGAATTTGAGGAAAGCATGGAATGTGGTTTCACTAGAGTGGGCACAGGTGATATGCCTACTGCGGTTAGCCCTCGCATGTCTGGATATATGGATACTCAGAGCGCTGGTTTAAGGCCGCATTTCTCTACTGAAAGAAAATGGGCTCTTGGCCTTCAGTCACGTGCTCATCCTCGTGAAATAATAATGGAAGTTCTTAAAGCTCTTCAAGAATTGAATGTTGCATGGAAAAAGATTGGCCATTACAATATGAAATGCAGATGGATGCCTGGGTTCTATCACCGATACAACGATGAATCTGATATCATTGGGAATGATGATGTGGCTGCAAGTGCATCTTACGTAGTTAAGTTTGAAGTTCAGCTATACAAGACCAGAGAGGAGAAGTATCTGCTTGATCTGCAGAGGGTAAGCGGCCCGCAGCTTCTATTTCTGGACTTATGTGCGGCGTTCCTCGCCCAGCTGAGAGTTCAATGA

Network for GWHGAAEX012705

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	19	272	9.30E-79
PF00627.30	UBA	294	330	2.80E-06
PF02149.18	KA1	459	500	1.80E-13

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_AMPK

KEGG pathway

KO	Enzyme	pathway	mapID
K07198	PRKAA, AMPK	Apelin signaling pathway	map04371
		FoxO signaling pathway	map04068
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		mTOR signaling pathway	map04150
		Autophagy - animal	map04140
		Tight junction	map04530
		Insulin signaling pathway	map04910
		Glucagon signaling pathway	map04922
		Adipocytokine signaling pathway	map04920
		Oxytocin signaling pathway	map04921
		Axon regeneration	map04361
		Longevity regulating pathway	map04211
		Longevity regulating pathway - multiple species	map04213
		Circadian rhythm	map04710
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.550
SRP064423	SRR2545915	Juvenile tuber	26.360
SRP108465	SRR5643513	five period of Gastrodia elata	28.710
	SRR5643514	five period of Gastrodia elata	38.110
	SRR5643515	five period of Gastrodia elata	29.680
	SRR5643524	five period of Gastrodia elata	35.000
	SRR5643525	five period of Gastrodia elata	28.160
	SRR5643528	five period of Gastrodia elata	28.480
	SRR5643658	five period of Gastrodia elata	30.540
	SRR5643659	five period of Gastrodia elata	21.630
	SRR5643660	five period of Gastrodia elata	21.690
	SRR5643661	five period of Gastrodia elata	21.430
	SRR5643662	five period of Gastrodia elata	24.960
	SRR5643663	five period of Gastrodia elata	21.220
	SRR5643664	five period of Gastrodia elata	20.040
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.300
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.360
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.860
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	23.330
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.220
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	44.710
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	44.710
SRP279888	Gastro	Gastrodia elata tuber	19.61
	Juven	Juvenile tuber	25.80
	Mother_Gastro	Mother tuber of Gastrodia elata	23.96
	Mother_Juven	Mother tuber of Juvenile	22.54