Detail information of GWHGAAEX012709/evm.TU.scaffold_45.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672176831|ref|XP_008808493.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At2g13600-like [Phoenix dactylifera] |
| Swissprot | tr|Q9SIT7|PP151_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g13600 |
| trEMBL | tr|F6I1N6|F6I1N6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB60853.1} |
| TAIR | AT2G13600 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 1748779 | 1751227 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012709
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 56 | 82 | 0.00047 |
| PF01535.19 | PPR | 116 | 144 | 0.0048 |
| PF13041.5 | PPR_2 | 213 | 261 | 8.60E-09 |
| PF01535.19 | PPR | 287 | 312 | 0.007 |
| PF13041.5 | PPR_2 | 347 | 394 | 2.10E-11 |
| PF01535.19 | PPR | 428 | 453 | 0.00022 |
| PF13041.5 | PPR_2 | 454 | 501 | 2.20E-09 |
| PF01535.19 | PPR | 528 | 552 | 0.014 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.440 |
| SRR2545915 | Juvenile tuber | 0.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.190 |
| SRR5643514 | five period of Gastrodia elata | 0.940 | |
| SRR5643515 | five period of Gastrodia elata | 1.060 | |
| SRR5643524 | five period of Gastrodia elata | 0.780 | |
| SRR5643525 | five period of Gastrodia elata | 0.360 | |
| SRR5643528 | five period of Gastrodia elata | 0.290 | |
| SRR5643658 | five period of Gastrodia elata | 0.290 | |
| SRR5643659 | five period of Gastrodia elata | 1.730 | |
| SRR5643660 | five period of Gastrodia elata | 1.600 | |
| SRR5643661 | five period of Gastrodia elata | 1.970 | |
| SRR5643662 | five period of Gastrodia elata | 2.510 | |
| SRR5643663 | five period of Gastrodia elata | 1.480 | |
| SRR5643664 | five period of Gastrodia elata | 1.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.160 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.540 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.630 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.620 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1.55 |
| Juven | Juvenile tuber | 1.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.18 | |
| Mother_Juven | Mother tuber of Juvenile | 0.31 |