Detail information of GWHGAAEX012717/evm.TU.scaffold_45.50
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|384145942|ref|YP_005528758.1| | 5.00E-08 | serine/threonine protein kinase [Amycolatopsis mediterranei S699] |
| nr | gi|695080418|ref|XP_009387671.1| | 1.60E-134 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|C0LGH3|Y5614_ARATH | 1.00E-69 | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 (Precursor) |
| trEMBL | tr|M0UAP1|M0UAP1_MUSAM | 1.00E-104 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_AchrUn_randomP19820_001} |
| TAIR | AT1G56130 | 3.00E-68 | Leucine-rich repeat transmembrane protein kinase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 2079951 | 2116196 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012717
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.5 | LRR_8 | 48 | 107 | 2.30E-08 |
| PF11721.7 | Malectin | 162 | 291 | 1.60E-23 |
| PF00069.24 | Pkinase | 319 | 371 | 7.70E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_PERK-1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.360 |
| SRR2545915 | Juvenile tuber | 0.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.080 |
| SRR5643514 | five period of Gastrodia elata | 0.570 | |
| SRR5643515 | five period of Gastrodia elata | 0.920 | |
| SRR5643524 | five period of Gastrodia elata | 0.440 | |
| SRR5643525 | five period of Gastrodia elata | 0.070 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.060 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.070 | |
| SRR5643662 | five period of Gastrodia elata | 0.070 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.40 | |
| Mother_Juven | Mother tuber of Juvenile | 0.10 |