Gene detail

Detail information of GWHGAAEX012718/evm.TU.scaffold_45.52

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521465997\|ref\|YP_008153270.1\|	2.00E-31	hypothetical protein SCE1572_34485 [Sorangium cellulosum So0157-2]
KOG	KOG0198	9.00E-152	MEKK and related serine/threonine protein kinases
nr	gi\|672176800\|ref\|XP_008808477.1\|	0	PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Phoenix dactylifera]
Swissprot	tr\|Q9CAD5\|YODA_ARATH	1.00E-133	Mitogen-activated protein kinase kinase kinase YODA
trEMBL	tr\|I1IMP1\|I1IMP1_BRADI	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI4G22760.1}
TAIR	AT1G53570	9.00E-152	mitogen-activated protein kinase kinase kinase 3

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	2155406	2160011	-

Transcript Sequence
>GWHTAAEX012718 CCCGTATCGGGAGAAAAATACGACGTGTGCAAAAGTTGAGGAAGATTCTATACTTAATGCCACGTCAGCGCATCACCGATGGGTTTACTTCCCCGCCGGCTCTCCCACTGTGTTGTCGCTCTCTGCTGCTCCCTACTCTCTCCCTTTTTTCTATACTTATCTCTTTCTCTCTCCCCTCCCTATATTTCCCTCTCCCTATCGACTACGCGTTCCGGAACTGGGAATTAATTGAAGATGCCCGCATGGTGGAAGGGGAAGTCGAAGTCCAAATCGAAGGCGAACAAGTCTTCAGGGAACGATCCTGGATGGAGGGAAGATGATGCGGAGGTAGAGAGCTCGTTGACTCCCAAACAGTGGCGGGGACCCGGCAAGGGGAAGGCCAACAGCTTCGATGGAATTCTGGGAAGAGCTAGGAAAGGCAGTGAATCCGTCTCCGCTGTCGCATCCAAAAGCTGCAGCGCCGAATCGAAGGGCCTTTTTGCGTCCCGCCATCCACTGCCGCGCCCCTTTGTTTCTTCACCTATGCTGTCTCCGACGCCGGCAGATCTCGGGATGGCGGCGCCTTCCGCTTCGGCTTCGGCATCGGCATCCAGCGTCAGCTCCTCAGGATCCTCCGATGACGCTCCAGATTTTGGCTTCTACAGAATGTCAGATCCCTTAAACATGGCAAGGGGAGGGCACGTTTTGCCAGATTTGCAAAGACAGCAGCATGTGCCTGAAGCCAGATACCCTGTGCCCTTTCATCCAGTTTCGGAGCATTCAAGAAACCATGAGATAATTATATCTCCAAAAAAGGAAAATCACTTACATGGTCTCAATGCATCCTCAAATGCTAATAATGTCTGTTCTCCAGCTGTAACTTACTCAGAGAGCATATTTAATCCTAGAACTGTGAGTTGTGCTCCTATTGCTCGGGGGCCTCTTTTTTGTACAGCCGCTGCACTCTCTCCTGGGTCGCCTACAGGAAGGCAGGATAATCTCAGAAGCCCACCTCAGCCTCTGCCTCTTCCCCCAGTTGTGCCTAATTCTCCAAGTTCTCCTCGACCTTTCCAGTCATCATGGAAGAAGGGCAAGATGCTGGGTAGAGGAACCTTTGGACATGTTTATCTTGGATTTAACAGTGAAAGTGGGCAAATGTGTGCTATTAAAGTAGTACAAGTCATATCTGATGATTCCAATTCTAAAGAATCTCTCAAGCAATTAAACCAAGAAATCAATTTGCTTAGCCAGCTTTCGCATCCAAACATTGTGCAATATTATGGCAGTGAACTGATGGACGACGCAGTTTCAGTTTATCTCGAGTATGTTTCCGGCGGCTCCATTCACAAGTTGCTTCAGGAATATGGCCCATTTGGGGAGCCTGTTATCAAGAACTATACTGCGCAGATTCTTTCTGGACTTGCTTATCTGCATGGGAGAAAAACGGTGCACCGGGATATCAAAGGGGCAAATTTACTTGTAGATCCCAATGGTGAGGTCAAACTAGCTGATTTCGGCATGGCTAAACATACATCATCTTACACATCAATTAGATCATTTAAAGGAAGCCCATATTGGATGGCTCCTGAGGTTATCATGAACGGAAAAGGCTACAGTCTCTCCGTAGATATCTGGAGCCTTGGATGTACAGTACTCGAGATGGCAACTTCCAAGCCTCCGTGGAGCCAATTCGAAGGGGTGGCTGCAATATTTAAAATTGGGAATAGCAAAGATGTGCCGGATATCCCTGATCACCTATCTCCAGAAGCGAAGAGTTTTGTTTTAGCGTGCCTGCAGAGAGATCCTTCGGCCCGGCTGACGGCCGGCGAATTGATGGACCATCCTTTCGTGAGCGACCAAGCGGCTGTAAGATCGGCAAGATTGAGTATGAACAAGGACGCCCTTCCTTCGCCTTCTGATGGAAGCTGCTATTCAAGGACTGTTGTTATGAAGGATTACCGCGGAAACCGAAGAAGCGCTTCTCCTTTACTCGATAAAAACCACGAGCGAGCGCGTAGTGATCATGCTGCTAGAGATTGCCGAAACAACAGAAGCGTTTCTCCTCTGCGCCCGATCCCTCTTATGAGCGGAAATTCGAGTAATGTGATGGAGGCGAGAATGAACATGTCGCTACCGGTGTCGCCTTGCTCCAGCCCTCGGAGGCAGAATGTGCAGAGTGATAACCGGAGCTGCATTCCGTCTCCGACGCATCATTATTTGTATCAAATGAGAGCCAGCCATAATAATTTTGCAGATCCCTCTGCGGACATCTCGGAACTCAGAATCGTATCGCACTATGGCTCGCCTAGGAGATGATTGCCGACTTTTTGAAGGGGGGATTCTTTCTCGCTGGCTTAACTGTGAAGAGGCTTGTTGAAAATAGAATTTTACTGATCCGAGCCTACATTTTTTTTTTTTTTTTTT

Network for GWHGAAEX012718

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	277	532	5.30E-72

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE11

KEGG pathway

KO	Enzyme	pathway	mapID
K04421	MAP3K3, MEKK3	MAPK signaling pathway	map04010
		GnRH signaling pathway	map04912
		Neurotrophin signaling pathway	map04722

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.650
SRP064423	SRR2545915	Juvenile tuber	41.380
SRP108465	SRR5643513	five period of Gastrodia elata	42.220
	SRR5643514	five period of Gastrodia elata	44.960
	SRR5643515	five period of Gastrodia elata	47.730
	SRR5643524	five period of Gastrodia elata	45.510
	SRR5643525	five period of Gastrodia elata	68.560
	SRR5643528	five period of Gastrodia elata	43.760
	SRR5643658	five period of Gastrodia elata	86.680
	SRR5643659	five period of Gastrodia elata	36.700
	SRR5643660	five period of Gastrodia elata	32.630
	SRR5643661	five period of Gastrodia elata	37.810
	SRR5643662	five period of Gastrodia elata	38.100
	SRR5643663	five period of Gastrodia elata	32.280
	SRR5643664	five period of Gastrodia elata	61.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	56.600
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	50.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.930
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	70.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	81.130
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	64.600
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	64.280
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.130
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	59.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.870
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.870
SRP279888	Gastro	Gastrodia elata tuber	40.50
	Juven	Juvenile tuber	53.69
	Mother_Gastro	Mother tuber of Gastrodia elata	64.77
	Mother_Juven	Mother tuber of Juvenile	58.85