Detail information of GWHGAAEX012720/evm.TU.scaffold_45.60


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|117924123|ref|YP_864740.1|3.00E-1350S ribosomal protein L28 [Magnetococcus marinus MC-1]
KOGKOG32782.00E-84Mitochondrial/chloroplast ribosomal protein L28
nrgi|514734556|ref|XP_004957940.1|1.52E-101PREDICTED: 54S ribosomal protein L24, mitochondrial-like [Setaria italica]
trEMBLtr|K3ZWY9|K3ZWY9_SETIT6.00E-102Uncharacterized protein {ECO:0000313|EnsemblPlants:Si031121m}
TAIRAT4G314602.00E-84Ribosomal L28 family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005225175772528714-
Transcript Sequence

Network for GWHGAAEX012720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00830.18Ribosomal_L28451022.30E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02902RP-L28, MRPL28, rpmB Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.760
SRR2545915Juvenile tuber34.740
SRP108465SRR5643513five period of Gastrodia elata41.690
SRR5643514five period of Gastrodia elata39.620
SRR5643515five period of Gastrodia elata34.750
SRR5643524five period of Gastrodia elata38.450
SRR5643525five period of Gastrodia elata18.780
SRR5643528five period of Gastrodia elata17.920
SRR5643658five period of Gastrodia elata13.040
SRR5643659five period of Gastrodia elata52.580
SRR5643660five period of Gastrodia elata58.440
SRR5643661five period of Gastrodia elata58.440
SRR5643662five period of Gastrodia elata60.410
SRR5643663five period of Gastrodia elata54.670
SRR5643664five period of Gastrodia elata55.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_133.340
SRR6049655Rhizomagastrodiae_C368-T10_good_129.470
SRR6049656Rhizomagastrodiae_C368-T07_good_137.650
SRR6049657Rhizomagastrodiae_C368-T07_good_125.140
SRR6049658Rhizomagastrodiae_C368-T04_good_125.300
SRR6049659Rhizomagastrodiae_C368-T04_good_125.850
SRR6049660Rhizomagastrodiae_C368-T01_good_126.700
SRR6049661Rhizomagastrodiae_C368-T04_good_128.060
SRR6049662Rhizomagastrodiae_C368-T01_good_146.870
SRR6049663Rhizomagastrodiae_C368-T01_good_140.640
SRR6049664Rhizomagastrodiae_C368-T10_good_151.740
SRR6049665Rhizomagastrodiae_C368-T10_good_151.740
SRP279888GastroGastrodia elata tuber 48.72
JuvenJuvenile tuber35.02
Mother_GastroMother tuber of Gastrodia elata 18.68
Mother_JuvenMother tuber of Juvenile 18.51