Gene detail

Detail information of GWHGAAEX012724/evm.TU.scaffold_45.65

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385331604\|ref\|YP_005885555.1\|	5.00E-74	RNA helicase, ATP-dependent DEAH box, HrpA type [Marinobacter adhaerens HP15]
KOG	KOG0920	0	ATP-dependent RNA helicase A
nr	gi\|743817107\|ref\|XP_010930827.1\|	0	PREDICTED: ATP-dependent RNA helicase DHX29 [Elaeis guineensis]
Swissprot	tr\|Q38953\|DHX8_ARATH	3.00E-47	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|M0T7Y4\|M0T7Y4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P17860_001}
TAIR	AT1G58060	0	RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	2715134	2860716	-

Transcript Sequence
>GWHTAAEX012724 GGAAGAAAGCCGAGGTTTAAACAAAACGTCGATCGTTGTATTGTTCTGCCAAACAAGCAATGGCTCCCAAGAAGCAGAAGCAGCTGCAGCAGCGCAGTGGGAAAGCCCACTTAAAATCTAAGGGCAATGGTTCAAACCCCAAATCCGCTCCAAAGCTACAGATATCGGCCGATAACGAGCGTCGCCTTCGTCGCCTTCTTCTCAACACTGAATCACCGCATGCAGATACTGCACCATTGGAGCCCTCTGTCGCCGCGGCTGACACCGTCGGAACGCGAGCTCAGAAAGTTAAAAAGCTCCGCGGTGTTTACGACAAGCTGTCTCTCGAGGGTTTCACCTGCGATCAAATTGAGCATGCGCTTTCCGTTCTGAACGAGTCAGCAACTTTTGAGTCTACATTAGACTGGCTGTGTTTAAATATACCTGGAAATGAGCTTCCTCTGAAATTTTCTAGCGGGGCAATATCTTCTGCAAATGAAGGAGATTGTTCGGTTAGAATCATATCCACAGCACGAGCAGATTGGGTTCCTACTAAGCATTTTTTAGAGGAACTGAATGAAGGCAGTTCTGAAGTTAGTGTTCTCTTTAAAGGGCAGCGAGATGATGCATCTTTGGATTTTGGAAAATCACAAGCCGCCTGGATTCGGCAGTATGTGGAGCAACAAGATGATGAAGAAGAAGATGAACACAAGGAAAAAGAAGAGGTAGTTGACCCAAGCGCTCTTACTGTTTCCATCACTGAAGAGTATCGTCAAGCAAGGTTGGGAGCTTTACAAGCAAAACAAGAGGGAGACAGGGCTGTTCAGAGACACTACAGTGAAATTATCAACAAACTAAAGCAAGAATTCTCATATCTAGGCATATCAGAAAGAGATTTAGAATTGAACTTGCAAAAAGAAATTCTTAATCAGAAAATGCAGGAAATGCCTTGTGACCCCCCACAAGGTCTATCACTTGAATCAAATCCGCTGGATGAATACAAGCTTGAAAGGCAAGGTTCATTTAGTGCATTTATGGTTGATTTCCCCAGTTTGGAAGAACATAATCGTGCTAGTGGCAGTTTGACCCATGCTATTCTTGAGGTATGTGAACAGAAAGAAGAGACTGAAGAGTTGGAACTTGATTATCTTTTTTCTGAAGGAACCTCTGCCAGTGAAGCTTTAGAATCAGAAGGCTTGAAGCAACAAAAGAAAAAGGAATTGCTACAACCTGCATATGGGCATATTTTAGGAAACTTTGAAGAAATATGGAAAAAGGGTGATTTGGGAAAAATTCCCAAGGCTGTTCTACAAAGGTTGTGCCAGAGGCTTCGATGGGAAGCACCCAAGTACAACAGAGTATCAGAAGTAGAAGATAATTTCCTTTATTCTGTTAGTGTTTTGCGTGCAGCAAGTGGACGTGGAAAGGCCCGTAAAGCTGGAGGTTTGATAACCTTCCATCTTCCTAATCAAGAAACAGCTTCTCAATCGTCCGAGGAGGCACAAAATAAAGTAGCAGCCTTTGCTCTTTATCAACTGTTTCCAGATCTCCCATTTAATCGCCTTCTTGCAGAACCGTATGCTACATTTATTACAAAAGGGCTGGCAGAAAATGATGTTTTGACAAAAGTGGAAGACAATGAGGATATCCGTAGATCTGGATTTGTGGAGTCTCTGTTGTCTGCTGGGGTTTCTCAACCAATAGTTTCCAAAGATGCTATGGAGGAATCTGTGGGTAGAGAAATGCTTGTTGATCAATTGTGCAAAGACAGTGGACAGAGTTTTTTGACTAACACAGTAAAATTGACCACTTTAGAAGGTTTAAGCTACCAGGAAAAATTGGACAGCAACCTCTTAAAGGCGGAGCTACAAAATAAAATGAAGAATCCTAAATACATGGAAATGCTGGTGATCAGGGCTGCTCTTCCTATAACTAAGCTAAAGGATATCCTTTTACAAGCTATGCAAGACAATGATGTAGTTGTTGTTTCTGGGGAAACTGGTTCTGGTAAAACGACTCAGGTTCCTCAGTTTATTATGGATGATATGATTAAATTGGGATTTGGCAGCCGTTGTAACATCATCTGCACACAACCTAGGAGAATTGCGGCTGTATCAGTGGCTGAAAGAGTGTCTGATGAACGATGCGAGTCCTTTCCAGGGGGCGAGTCTTTAGTTGGCTATCAAGTTCGGCTTGATAGTGTCAGGAATGAGAGGACAAAGCTACTTTTCTGCACAACAGGCATTCTTCTTAGGAAACTTGCTGGCGACAGAGATCTGACTGGTGTCTCGCATGTTATTGTGGATGAAGTTCATGAGCGCTCTCTGCTGGGTGACTTTTTACTCACTGTTTTGAAAAACATCCTGAAGAGGCAATCTACTTGCAGCAGGCGCAGAAGCAAGCTTAAAGTGATTCTCATGTCTGCCACAGTTAATTCAAGTTTGTTTTCGAAATACTTCGGGAATTGTCCTGTTCTTACTGCAGAAGGGAGAACGCATCCAGTTTCTGTATCTTATCTTGAAGACATCTATGAAACATTTGATTATCATCTTCCTTCAGACTCCATAGCATCTGGGACATTAGTGATATCCAACAGAGGAAAAAGGCTGGTGAAAGGTTCTGTTGATAATCATAGGGGAAAGAAGAACCTTGTTATGGCTTCATGGGGAGATGAATCATTACTTCATGTAGACTATGTCAATCCCAATTATATACCAGAGTACTATCAATCATATAGTGAGAGGACGAAACAGAATATTAAAAGTTTGAATGAAGATGTGATTGATTTTGAACTTCTGGAAAATTTAATTTGCTACATTGATACAACATGCCCGGCAGGAGCCATTCTTGTTTTTCTACCTGGAGTAGCAGAAATTGACCTTCTTGTCAACAAGTTAACTAATAGTTTTCAATTTCGTGGACTGTCATCAGATTGGGTTCTTCCATTACATTCATCTCTTGCTTCCATTGACCAACGCAAAGTGTTTCTGTCCCCACCTGAAAATATACGCAAGGTGATTGTGTCCACCGACATTGCTGAAACCAGTCTTACTATTGATGATGTTATATATGTTGTGGACACTGGAAAGCACAAAGAAAGCCGTTTTAATACTCAAAAGAAAATGTCGAGCATGGTTGAGGATTGGATATCCCAAGCAAATGCAAAACAAAGACGAGGGAGAGCTGGCCGTGTAAAAGCTGGAGTTTGCTTTTGTTTGTATACTCTTTATAGGTTCGAGAAACTCATGCGCCCCTTTCAGGTACCAGAAATGCTACGAATGCCACTTACTGATCTGTGTCTACAGATCAAATCCCTTTCTTTAGGTGATATAAAATCTTTCCTTTTGGAGGCAATAGAACCACCGAGAGAAGAGGCAATTTCCTCTGCAATTGACTTGCTATATAAAGTTGGAGCCTTTGAACGATATGACAAATTGTCACCTCTTGGTTACCATTTGGCAAAACTTCCTGTGGATGTCCTTATTGGAAAGATGATGTTTTATGGCGCAATTTTTTGTTGCTTATCTCCAGTCCTTTCAATTGCAGCCTTTTTGAGCCACAAATCTCCATTTCTTAATCCCAAAGATGAGAAGCACAATGTTATACGAGCAAAATCATCTTTGTTGACTTGTGGGCTTGATTGTGGGATCATAGCTGATGAAAGCAGCAAGCAATCGGATCACCTATTATTGGTTGTTGCTTACAACAGATGGGCTAGGATTCTACATGAGAATGGGTCAAGTGCTGCATATCGTTTTTGTAATACATTTTTTCTGAACAGTTCTGTAATGTACACTGTAAGGGACATGCGCATACAGTTTGGTAGCTTGTTAGCTGATATTGGACTGATCTCTTTCCCAAAAAAAGTTCAGTTGGGCGATGATAGAAGTAAAGGAAAACTTGATGATTGGCTTGCTGATATGAAACATCCATTCAACATGCATGCCATGCATTCTGCCGTTATTAAGTCTATTTTGTGTGCAGGCCTTTATCCCAATGTGGCTGCAACTGTAGAGGGCACTGTTGGGGTACCTCTTAGAAGCAATAAAACACCATCAAACAAAATTCTTACAAATGATTGCCCTCTTTGGTTTGATGGGAAAAGAGAAGTTCATCTTCATCCATCCTCAGTGAACTATAACATTAAAGGCTTTCAGTATCCATTTCTTGTTTTCCTTGAAAAGGTTGAAACCAGCAGGGTGTTTCTGAGAGACACGAGTATTATATCTCCTTACTCTCTTCTCCTTTTTGGTGGCTCCATTTGTGTTCAACATCAGGTGGGTTTGGTCATCATAGACAACTGGTTGAAACTAAGTGCACCTGCACAAACAGCTGTTCTTTTCAAAGAACTTCGTTCAACACTTCATGCCGTTCTAAAAGATCTCATTCGCAACCCAGCGATGATGAGTGTTGCCAGTAATGAAGTAGTGAAGTCCATAATTCATCTACTGCTAACGGAGGACGCTTCTGGTCGTTCTTGAAGTTAAGGTATTGCTTCGATTTTTTCTTTTTTAAGAAGTTAAGCCTCAATTAAGCAATTATGTGACCGGTGGAATTTGAACTCTTGACCTTGATGCCAAGAATTTAAATCCAATAACGCTAACCAATGCGCAGCAACACAATTCACTTTGCAATTTATTAAAGTGTGCTGTTTCTGATTATTGTTGTGGTAAATCTGCAGCCTGTGTTTTCTTTTCTATGAATGCGGTAAATCTGCAGCCTGTGCCAAAGTGTAAAGAAGGAATTAGTTTGCTCTTTTGTACGTCAACCCACCAATCTCTATTCTAAAAAAGTGCTGATATATAATGACTCTCAAATAGCTTTCAAAAATATAAAATATTTTTCTCACAAAAAAACATGACAAGTCGTTGAATTTCTTGAGAAGCTATTAGGAGCTAAATAATTT

Network for GWHGAAEX012724

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	627	786	1.80E-09
PF00271.30	Helicase_C	909	1038	4.90E-11
PF04408.22	HA2	1103	1203	3.50E-14
PF07717.15	OB_NTP_bind	1295	1394	5.20E-20

Protein Sequence

>GWHPAAEX012724
MAPKKQKQLQQRSGKAHLKSKGNGSNPKSAPKLQISADNERRLRRLLLNTESPHADTAPLEPSVAAADTVGTRAQKVKKLRGVYDKLSLEGFTCDQIEHALSVLNESATFESTLDWLCLNIPGNELPLKFSSGAISSANEGDCSVRIISTARADWVPTKHFLEELNEGSSEVSVLFKGQRDDASLDFGKSQAAWIRQYVEQQDDEEEDEHKEKEEVVDPSALTVSITEEYRQARLGALQAKQEGDRAVQRHYSEIINKLKQEFSYLGISERDLELNLQKEILNQKMQEMPCDPPQGLSLESNPLDEYKLERQGSFSAFMVDFPSLEEHNRASGSLTHAILEVCEQKEETEELELDYLFSEGTSASEALESEGLKQQKKKELLQPAYGHILGNFEEIWKKGDLGKIPKAVLQRLCQRLRWEAPKYNRVSEVEDNFLYSVSVLRAASGRGKARKAGGLITFHLPNQETASQSSEEAQNKVAAFALYQLFPDLPFNRLLAEPYATFITKGLAENDVLTKVEDNEDIRRSGFVESLLSAGVSQPIVSKDAMEESVGREMLVDQLCKDSGQSFLTNTVKLTTLEGLSYQEKLDSNLLKAELQNKMKNPKYMEMLVIRAALPITKLKDILLQAMQDNDVVVVSGETGSGKTTQVPQFIMDDMIKLGFGSRCNIICTQPRRIAAVSVAERVSDERCESFPGGESLVGYQVRLDSVRNERTKLLFCTTGILLRKLAGDRDLTGVSHVIVDEVHERSLLGDFLLTVLKNILKRQSTCSRRRSKLKVILMSATVNSSLFSKYFGNCPVLTAEGRTHPVSVSYLEDIYETFDYHLPSDSIASGTLVISNRGKRLVKGSVDNHRGKKNLVMASWGDESLLHVDYVNPNYIPEYYQSYSERTKQNIKSLNEDVIDFELLENLICYIDTTCPAGAILVFLPGVAEIDLLVNKLTNSFQFRGLSSDWVLPLHSSLASIDQRKVFLSPPENIRKVIVSTDIAETSLTIDDVIYVVDTGKHKESRFNTQKKMSSMVEDWISQANAKQRRGRAGRVKAGVCFCLYTLYRFEKLMRPFQVPEMLRMPLTDLCLQIKSLSLGDIKSFLLEAIEPPREEAISSAIDLLYKVGAFERYDKLSPLGYHLAKLPVDVLIGKMMFYGAIFCCLSPVLSIAAFLSHKSPFLNPKDEKHNVIRAKSSLLTCGLDCGIIADESSKQSDHLLLVVAYNRWARILHENGSSAAYRFCNTFFLNSSVMYTVRDMRIQFGSLLADIGLISFPKKVQLGDDRSKGKLDDWLADMKHPFNMHAMHSAVIKSILCAGLYPNVAATVEGTVGVPLRSNKTPSNKILTNDCPLWFDGKREVHLHPSSVNYNIKGFQYPFLVFLEKVETSRVFLRDTSIISPYSLLLFGGSICVQHQVGLVIIDNWLKLSAPAQTAVLFKELRSTLHAVLKDLIRNPAMMSVASNEVVKSIIHLLLTEDASGRS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0004386	Molecular Function	helicase activity
GO:0005524	Molecular Function	ATP binding
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	18.500
SRP064423	SRR2545915	Juvenile tuber	15.610
SRP108465	SRR5643513	five period of Gastrodia elata	8.080
	SRR5643514	five period of Gastrodia elata	9.280
	SRR5643515	five period of Gastrodia elata	8.740
	SRR5643524	five period of Gastrodia elata	8.610
	SRR5643525	five period of Gastrodia elata	11.530
	SRR5643528	five period of Gastrodia elata	5.910
	SRR5643658	five period of Gastrodia elata	9.020
	SRR5643659	five period of Gastrodia elata	9.190
	SRR5643660	five period of Gastrodia elata	8.290
	SRR5643661	five period of Gastrodia elata	7.930
	SRR5643662	five period of Gastrodia elata	7.870
	SRR5643663	five period of Gastrodia elata	9.000
	SRR5643664	five period of Gastrodia elata	8.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.280
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.070
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.530
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	11.440
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	11.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	10.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.710
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.380
SRP279888	Gastro	Gastrodia elata tuber	9.54
	Juven	Juvenile tuber	12.88
	Mother_Gastro	Mother tuber of Gastrodia elata	9.48
	Mother_Juven	Mother tuber of Juvenile	10.61