Detail information of GWHGAAEX012728/evm.TU.scaffold_45.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|430751902|ref|YP_007214810.1| | 3.00E-15 | thioredoxin [Thermobacillus composti KWC4] |
| KOG | KOG0190 | 5.00E-64 | Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) |
| nr | gi|743816957|ref|XP_010930795.1| | 0 | PREDICTED: protein disulfide isomerase-like 5-2 [Elaeis guineensis] |
| Swissprot | tr|Q0JD42|PDI52_ORYSJ | 9.00E-178 | Protein disulfide isomerase-like 5-2 (Precursor) |
| trEMBL | tr|M0SZ81|M0SZ81_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P17020_001} |
| TAIR | AT1G35620 | 5.00E-64 | PDI-like 5-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 3023714 | 3064628 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012728
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 41 | 143 | 9.30E-25 |
| PF13848.5 | Thioredoxin_6 | 185 | 342 | 3.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09580 | PDIA1, P4HB | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 113.650 |
| SRR2545915 | Juvenile tuber | 177.130 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 112.680 |
| SRR5643514 | five period of Gastrodia elata | 106.540 | |
| SRR5643515 | five period of Gastrodia elata | 100.250 | |
| SRR5643524 | five period of Gastrodia elata | 110.610 | |
| SRR5643525 | five period of Gastrodia elata | 53.210 | |
| SRR5643528 | five period of Gastrodia elata | 52.920 | |
| SRR5643658 | five period of Gastrodia elata | 50.760 | |
| SRR5643659 | five period of Gastrodia elata | 95.660 | |
| SRR5643660 | five period of Gastrodia elata | 92.420 | |
| SRR5643661 | five period of Gastrodia elata | 89.640 | |
| SRR5643662 | five period of Gastrodia elata | 76.320 | |
| SRR5643663 | five period of Gastrodia elata | 84.700 | |
| SRR5643664 | five period of Gastrodia elata | 79.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 131.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 150.840 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 134.530 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 139.420 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 163.420 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 179.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 137.630 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 161.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 128.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 138.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 145.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 145.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 120.57 |
| Juven | Juvenile tuber | 155.96 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 82.43 | |
| Mother_Juven | Mother tuber of Juvenile | 112.40 |