Detail information of GWHGAAEX012729/evm.TU.scaffold_45.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307153189|ref|YP_003888573.1| | 2.00E-29 | nitrogen-fixing NifU domain-containing protein [Cyanothece sp. PCC 7822] |
| KOG | KOG2358 | 2.00E-74 | NifU-like domain-containing proteins |
| nr | gi|743816872|ref|XP_010930770.1| | 2.75E-98 | PREDICTED: nifU-like protein 2, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q93W20|NIFU2_ARATH | 1.00E-87 | NifU-like protein 2, chloroplastic (Precursor) |
| trEMBL | tr|M0T7X4|M0T7X4_MUSAM | 5.00E-94 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P17760_001} |
| TAIR | AT5G49940_1 | 2.00E-74 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 3327085 | 3346572 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012729
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01106.16 | NifU | 94 | 159 | 7.00E-26 |
| PF01106.16 | NifU | 175 | 237 | 3.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016226 | Biological Process | iron-sulfur cluster assembly |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
| GO:0005506 | Molecular Function | iron ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 43.350 |
| SRR2545915 | Juvenile tuber | 41.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.370 |
| SRR5643514 | five period of Gastrodia elata | 28.090 | |
| SRR5643515 | five period of Gastrodia elata | 26.870 | |
| SRR5643524 | five period of Gastrodia elata | 30.770 | |
| SRR5643525 | five period of Gastrodia elata | 45.720 | |
| SRR5643528 | five period of Gastrodia elata | 60.920 | |
| SRR5643658 | five period of Gastrodia elata | 70.810 | |
| SRR5643659 | five period of Gastrodia elata | 24.790 | |
| SRR5643660 | five period of Gastrodia elata | 26.700 | |
| SRR5643661 | five period of Gastrodia elata | 22.220 | |
| SRR5643662 | five period of Gastrodia elata | 24.070 | |
| SRR5643663 | five period of Gastrodia elata | 26.670 | |
| SRR5643664 | five period of Gastrodia elata | 25.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.400 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 38.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 31.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 50.87 |
| Juven | Juvenile tuber | 59.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 68.65 | |
| Mother_Juven | Mother tuber of Juvenile | 83.80 |