Detail information of GWHGAAEX012732/evm.TU.scaffold_45.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|317053923|ref|YP_004117948.1| | 9.00E-13 | zinc finger C2H2-type domain-containing protein [Pantoea sp. At-9b] |
| KOG | KOG1721 | 1.00E-32 | FOG: Zn-finger |
| nr | gi|743816908|ref|XP_010930779.1| | 1.22E-134 | PREDICTED: uncharacterized zinc finger protein At4g06634-like [Elaeis guineensis] |
| Swissprot | tr|Q2V3L3|Y4634_ARATH | 3.00E-113 | Uncharacterized zinc finger protein At4g06634 |
| trEMBL | tr|M0RIM5|M0RIM5_MUSAM | 2.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P16000_001} |
| TAIR | HS4507955 | 1.00E-32 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 3607905 | 3624446 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012732
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00096.25 | zf-C2H2 | 75 | 97 | 0.0062 |
| PF00096.25 | zf-C2H2 | 102 | 126 | 0.015 |
| PF00096.25 | zf-C2H2 | 132 | 156 | 0.0013 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.810 |
| SRR2545915 | Juvenile tuber | 13.380 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.820 |
| SRR5643514 | five period of Gastrodia elata | 12.010 | |
| SRR5643515 | five period of Gastrodia elata | 14.520 | |
| SRR5643524 | five period of Gastrodia elata | 11.970 | |
| SRR5643525 | five period of Gastrodia elata | 24.850 | |
| SRR5643528 | five period of Gastrodia elata | 25.330 | |
| SRR5643658 | five period of Gastrodia elata | 25.280 | |
| SRR5643659 | five period of Gastrodia elata | 17.600 | |
| SRR5643660 | five period of Gastrodia elata | 16.020 | |
| SRR5643661 | five period of Gastrodia elata | 16.430 | |
| SRR5643662 | five period of Gastrodia elata | 18.160 | |
| SRR5643663 | five period of Gastrodia elata | 17.050 | |
| SRR5643664 | five period of Gastrodia elata | 17.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 17.850 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.340 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.480 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.650 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.170 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.67 |
| Juven | Juvenile tuber | 17.25 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.20 | |
| Mother_Juven | Mother tuber of Juvenile | 23.06 |