Gene detail

Detail information of GWHGAAEX012739/evm.TU.scaffold_45.101

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1083	1.00E-75	Putative transcription factor ASH1/LIN-59
nr	gi\|672121649\|ref\|XP_008784125.1\|	0	PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 isoform X1 [Phoenix dactylifera]
Swissprot	tr\|B9RU15\|ATXR5_RICCO	1.00E-150	Probable Histone-lysine N-methyltransferase ATXR5 (Precursor)
trEMBL	tr\|A0A067JQG3\|A0A067JQG3_JATCU	5.00E-157	Uncharacterized protein {ECO:0000313\|EMBL:KDP26137.1}
TAIR	AT5G09790_2	1.00E-75	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	4167642	4229964	-

Transcript Sequence
>GWHTAAEX012739 GGGCGTCACAATATCCGCGTCAGAAGTATCTTTCCCATCGGAGTCAGCCGGTTGATCGATTCATTTATAACTCTATTTGGCAATATTATGGGTGTCCTCACCCAATTTAAGAGAAAAAAAAAAAAAAACGATTCATTTCCGTGGGCATTTTCGTAATTTATGTGAGACAGCACAGCCAGGATCACCCGCCGCACAAGTCCCCTGCGACCAACTCGACCTCGCCCTCCATTTTGCCGAACTCCCGAAAGACTGGCGCAAGTTGCTTTTCGACATCTCTGAACAAATCGCATCGCCTTCTCGCAGAAAATCGTCTTCGACTTCTCCCGATCATGAGTCGCGCGGCGGCGCAATCCGTCCCGTCGTCGAACGGCTGCGTCAGGAAGCGGACCGCCGCGCCGCCTCCATCGAGCGGGAGAAAGCACAGATCCATGGAAGAAATAATGCGAACGGCGAAGCCATCATCGCCCATCACCGAAGACTATTACTCGGATCTCCTCTGCCAGCAATGCCGATTGGGCGAAGAGGAAGATAAGATTATCATTTGCGATCGATGCGACGTCGGATACCATCTCTATTGCCTTCGCCCGATCGTTGCGAGGGTTCCAACTGGCCCCTGGTTTTGCTCTAGCTGCAACGAAGATAAAACAGTTAGAAGATTCCCGCCTTTGCAAAAGACGATTGTCGATTTCTTCCGGATTCGAAAGTGTGCCAATGAGCCGTATAAGGAGCATTGTGGGCCCTCGAATGGTGGCAGGAAAAGGAGGAGGCGATCCATTTTCTTAGCCACCCAGAAGAAACGGAGGAGGATATTGCCCTTCTCTCCGAGCAAAGATCCGAACCGAAGGCTCATGCAAATGGCCTCCCTTGCCACTGCTCTTACTTCATTGAATATGGAGTTCAGCAACGATCTGACTTACATTTCTGGAATGGCTATTAGATCTGCCAACTCCTCAGTCCTAGAGACGGGTGGCATGCAGGTGCTAGCCAGAGAAGATAAAGAAACACTAAAGCTGTGCAGAACTATGTATAGGAGAGGGGAATGCCCTCCCTTGGTGGTGGTTTTTGATTCATGTGAAGGCTTCACGGTCCACGCTGATGAGGACATAAAGGACATGACGCTCATCTCAGAGTACACAGGGGATGTGGATTATCTTGAAAGACGAGAAAACGATGATTGTGACAGCATGATGACTCTTCTCCTTGCGACGAATCCGTCTCACAGCTTGGTCATTTGCCCTGATAGAAGGGGGAATATTGCTCGCTTCATCAGTGGTATTAATAATCACACCCCGGAGGGTAGGAAGAAGCAGAACCTTAAATGTGTCAGATACAGTGTGGATGGGCAGTGCCGAGTCTTGCTGGTGGCTTGCCGTGATATTTCTCGAGGGGAAAGACTGTACTACGACTACAATGGATATGAGCAGGAGTACCCGACCGAGTATTTTTTCTGAGTTTTTTTTTGCGAGAACTTCAATTTATTAACTCCCACGCCCCCTTCTTTTCTTTCCCTAACCTCCTCATTGGAAGAAGCCTTGATTCTTATTAGGCGTCTGAGGACTGTTTTTGTATATTTGGTGCCTCGCTTTCGTTTTGCCGTTGCAGTCCTCAAGTTTTTTCCAAAAGCTCGCGTATTTTGGCGTCCATTTAGCATTTTTTCTAGTTCCATTAACTGATGGTTCAATTGTTCAGTAATTTACTAATTGTGATCGACATATTTTATATGAAACCCAAGTTTTGTTGGTAGCTATTTGGTTAATTATGTCTTGAATAATGTTTGACTGCCTGAAGTGCAGCCAAACTTCGCAAGCGAATTGCCCCTCCC

Network for GWHGAAEX012739

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00628.28	PHD	57	103	2.70E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	PHD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.210
SRP064423	SRR2545915	Juvenile tuber	5.350
SRP108465	SRR5643513	five period of Gastrodia elata	6.080
	SRR5643514	five period of Gastrodia elata	3.330
	SRR5643515	five period of Gastrodia elata	5.550
	SRR5643524	five period of Gastrodia elata	3.310
	SRR5643525	five period of Gastrodia elata	2.270
	SRR5643528	five period of Gastrodia elata	1.320
	SRR5643658	five period of Gastrodia elata	1.100
	SRR5643659	five period of Gastrodia elata	5.340
	SRR5643660	five period of Gastrodia elata	4.790
	SRR5643661	five period of Gastrodia elata	4.770
	SRR5643662	five period of Gastrodia elata	2.800
	SRR5643663	five period of Gastrodia elata	2.570
	SRR5643664	five period of Gastrodia elata	2.350
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	6.600
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.970
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.420
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.560
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.670
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.180
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.180
SRP279888	Gastro	Gastrodia elata tuber	3.82
	Juven	Juvenile tuber	8.66
	Mother_Gastro	Mother tuber of Gastrodia elata	7.30
	Mother_Juven	Mother tuber of Juvenile	8.92