Detail information of GWHGAAEX012740/evm.TU.scaffold_45.102


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428206159|ref|YP_007090512.1|7.00E-22WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG02831.00E-123WD40 repeat-containing protein
nrgi|743817826|ref|XP_010931045.1|0PREDICTED: lissencephaly-1 homolog 1-like [Elaeis guineensis]
Swissprottr|P93340|GBLP_NICPL2.00E-12Guanine nucleotide-binding protein subunit beta-like protein
trEMBLtr|M0RIK9|M0RIK9_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P15840_001}
TAIRAT5G535001.00E-123Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000005242321874236313-
Transcript Sequence

Network for GWHGAAEX012740

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD402512820.00022
PF00400.31WD403363711.10E-05
PF00400.31WD403774130.00021
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.090
SRR2545915Juvenile tuber22.710
SRP108465SRR5643513five period of Gastrodia elata22.240
SRR5643514five period of Gastrodia elata19.040
SRR5643515five period of Gastrodia elata32.910
SRR5643524five period of Gastrodia elata20.530
SRR5643525five period of Gastrodia elata12.180
SRR5643528five period of Gastrodia elata20.710
SRR5643658five period of Gastrodia elata7.250
SRR5643659five period of Gastrodia elata35.220
SRR5643660five period of Gastrodia elata25.620
SRR5643661five period of Gastrodia elata36.190
SRR5643662five period of Gastrodia elata33.680
SRR5643663five period of Gastrodia elata32.920
SRR5643664five period of Gastrodia elata47.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_122.540
SRR6049655Rhizomagastrodiae_C368-T10_good_111.590
SRR6049656Rhizomagastrodiae_C368-T07_good_120.660
SRR6049657Rhizomagastrodiae_C368-T07_good_113.730
SRR6049658Rhizomagastrodiae_C368-T04_good_114.260
SRR6049659Rhizomagastrodiae_C368-T04_good_114.670
SRR6049660Rhizomagastrodiae_C368-T01_good_112.250
SRR6049661Rhizomagastrodiae_C368-T04_good_112.780
SRR6049662Rhizomagastrodiae_C368-T01_good_115.990
SRR6049663Rhizomagastrodiae_C368-T01_good_115.570
SRR6049664Rhizomagastrodiae_C368-T10_good_127.760
SRR6049665Rhizomagastrodiae_C368-T10_good_127.760
SRP279888GastroGastrodia elata tuber 12.26
JuvenJuvenile tuber9.69
Mother_GastroMother tuber of Gastrodia elata 64.30
Mother_JuvenMother tuber of Juvenile 63.22