Detail information of GWHGAAEX012746/evm.TU.scaffold_45.115
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296139915|ref|YP_003647158.1| | 7.00E-33 | hypothetical protein [Tsukamurella paurometabola DSM 20162] |
| KOG | KOG4473 | 4.00E-82 | Uncharacterized membrane protein |
| nr | gi|672116457|ref|XP_008781394.1| | 2.62E-87 | PREDICTED: vacuolar iron transporter homolog 4-like [Phoenix dactylifera] |
| Swissprot | tr|Q9M2C0|VITH4_ARATH | 1.00E-82 | Vacuolar iron transporter homolog 4 |
| trEMBL | tr|V7C1H5|V7C1H5_PHAVU | 6.00E-86 | Uncharacterized protein {ECO:0000313|EMBL:ESW24032.1} |
| TAIR | AT3G43660 | 4.00E-82 | Vacuolar iron transporter (VIT) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 4730454 | 4731392 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012746
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01988.18 | VIT1 | 33 | 120 | 3.30E-26 |
| PF01988.18 | VIT1 | 119 | 207 | 1.90E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0030026 | Biological Process | cellular manganese ion homeostasis |
| GO:0005384 | Molecular Function | manganese ion transmembrane transporter activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.340 |
| SRR2545915 | Juvenile tuber | 0.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.040 |
| SRR5643514 | five period of Gastrodia elata | 3.000 | |
| SRR5643515 | five period of Gastrodia elata | 2.180 | |
| SRR5643524 | five period of Gastrodia elata | 1.850 | |
| SRR5643525 | five period of Gastrodia elata | 7.960 | |
| SRR5643528 | five period of Gastrodia elata | 3.560 | |
| SRR5643658 | five period of Gastrodia elata | 5.140 | |
| SRR5643659 | five period of Gastrodia elata | 0.080 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.610 | |
| SRR5643663 | five period of Gastrodia elata | 0.400 | |
| SRR5643664 | five period of Gastrodia elata | 0.080 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.970 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.750 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.370 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.720 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.030 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.39 |
| Juven | Juvenile tuber | 0.70 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.28 | |
| Mother_Juven | Mother tuber of Juvenile | 0.41 |