Gene detail

Detail information of GWHGAAEX012747/evm.TU.scaffold_45.116

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4573	5.00E-55	Phosphoprotein involved in cytoplasm to vacuole targeting and autophagy
nr	gi\|672121679\|ref\|XP_008784140.1\|	3.45E-172	PREDICTED: autophagy-related protein 13-like [Phoenix dactylifera]
trEMBL	tr\|A0A059B9A7\|A0A059B9A7_EUCGR	3.00E-121	Uncharacterized protein {ECO:0000313\|EMBL:KCW62255.1}
TAIR	AT3G49590	5.00E-55	Autophagy-related protein 13

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	4732874	4784432	-

Transcript Sequence
>GWHTAAEX012747 CTCCTGAGCACTTGGTTACTTTTTCATGTTTGGAATTGGTATGCTATCTTTTAAAATGGAAATTGAATCCTGAGTCCTCACCTTCTTCAAATAAGGATTGTAGTATGTACACTAGAAGAGAAGCCTTATTCTAAGCTACAGCTGACGGAGTCTCGCGATCATTAAAGAAAGATTGGAATTTGAAGCTATTTTTTCCGTGGAGTTAATCTGTTGATCGAACTACGAAGATTTCGATTCTTGTCATTTGATCATTTTTTTGGGGTGCATGCTCTGACCGAGAGTTTGATCAACGGCTCATTTCGCTATTTTTCAAAACCCTAGGAACGACGCTGTTTTGTTCACTGAAAAAAAGTATACTCGCTGTTCAGATTCTTCCAGCGGTCGAAAGTATTCTGCCTCTAATCTTCAATGCTAATGTTGCTGCGGTGCGTTTGCATAGTCTACCGCTAAAGTGAAGTCAATCTTTGTGCTTCATTTCCTACTTTTTCATAATTTATCGACTTTGCTTTGGAGAGCTTGTTTTGTTTTCTGGTTTAATTATGGCGTCGCCATCTGGTTCCAATTCTCAGCCAGCTATAATCGAGCAAGTTATCACTGAATTCTTTGCCAAAAGCGTTCACATAATTCTGGAATCGAGGTCCCCATATGTTTCCTCCCGTAACTACAGTGCTGAACTTTTCATCTCATCGCCTTCTTCCTCATCTTCATCGAGCTTTAGACCAAGGGATAAATGGTTTAATCTGGCTCTGAGAGACTTCCCAGCAGCACTAGAGAATTTTGATATGTGGAGACAGAGTAATCTTGAGCCACTAGTTGTTGACGTAATCCTGAGTGATAAGAAGTCTGTTAGGAATGTGACTTGCCCTTCTCCTTGTGGGTTCCTCGTTCGGAATCTCTCTTCAGGTCGTGATGAATTTGTCCGTGGCAATAGATTTGAAAAAGTTTTGGAGAGGTGGATTGTGCAGTATGACAGTCAAAGTAGCAGTTGGCTCACCTTGAATTCTTCTCATCAGGGAAGGAAGAAGGGTAGCAGGGCTGCCTCCCACTCATCTGAATTTCAGTCCATGTACAAGAAAGTTTACAAGAAGATTATAGTTCTACTCAGATCTTTGTATGTCGCTGTTAGGCTTTTACCTACTTATAAGCTTTTCAGAGATCTCAATTCATCTTGTCAGATTCACCCACTTAGTCTTTCTCACAGGATCTTAACTTTTGCTCATCCTTTCACTCGGGAGGAAGATGCTGAAATGAATCAACTTGGATTTGGGCCACTTGACACATTTTTTGGAAAATTGTCCCTTTCTGTCACCTATTTGAAGAATGTTGAAGTTTTGGGTTCAGAGCCTTCCACTCCTATATCTACTCAATTTATTATGGATTATGTTGGGAGCCCACTGGCTGATCCTCTCAAGAGGTTCCATTCAGTTTCTTACATTGGATCAACATCTTCATGCGCTTCATTAAGCAGAAGGCATAGTTGGAGCAATGATCATGTGGAAACTCCTTCCTTTTCTACTACTCCATCACCTACATATTCCGATTCCCGAGCTTTGGATCAAAATTTGAAAACCCATCTTTCCCCACCTCATCAGTTACTTGACCCTTTTTCATCGCCTAGTTCCTTACCAATAGGTTCTTATGCAGCATGTACCAAAAATTATGATGAGTTTAGGCCATCGCCTCCATTTTCACCATTATCTACTCCATCCCCTCCATCCCGTTTGTGCAAAGCTCTTATACGTTCTGAGAGTGCTCCTGTTAGCATCCCTTTGTCAGGACTAAAGGGAAAAAGTGGAAGCCAAATTCAGGGTCTGCCACCTCCTTATTCTAACAGTAAGATCCGGGGGCGCCCTTTTCAAGCATATAGTGTTGGCACTCATCTTAGCATAACATGCACCCCTCAGGACTATTCACCTGAAAATAAGCTGCAGCTAAACAAAGAATCAATAAAGTCAATGGAGTTGAAGACTGACATGTTATCTTCCAAGATTCTCTTTTCTGGGAAAGACGATGATGGTAATCTATCTATATTAAAAGTTCCATCATACACTGCATCAACAATACCATCTAGAAGCTCTAGTAGGGTATCATTTGTGGATGAATTGGATGATTATGGATTTACCTGCCCTTTTGCTGAAGATAAAGAGTTGACAAATTCATACAGGGTTGAATTCGACAAGCACAAAGATCAAGCCACTGTGAGTTTGGGTGCAGGAAAATTTATTCCAATCAAAAGATCTCCTGATGCAGCTGTTGGTGCTCTTGTAAGGATGCTTAAAACTGCACCACCACTACAACTTGATAATTCCAATACACTCAGATCCACGCAAGTCTTCAAGGATGAAATATCAAGCATTAAATTCCAACAGAATAACAAGGATGGTGGAGTAATAAAAGTTGATAGTATTTCATGTATGAATGAAGCTTCAGAACTCTTAAAGTCGAGGACTGCTGCAGATGCTATAGAGGAACTTCAAACTTATAAGCGTATGAGGGAACTAATGCTTGAACAATCTGGATCCCTTGTGCAAGATATTGAAGATTCTGCAAAATCTAATTCTGGAGATCCAGCAGAGGCCTAATGCTGCTGTATCTTTTGTATATATGTACAGAATCATATGTACATCAAACTTTCTGTATATAATGCTTGTACTTTACACCAAACATAACTTATCCCATGTGCGGCTTAAGGTTTGTTTGATATTTCTTTTTGTTTTTGAGAGCAATTCGCTGCTTAAAAAGTCACACAGGAAAGAGATTAAATGTATATTCTCTTAGATGACAACGATAATGACTAGTCATTTAATATGCTTTTTTTGTCCATATGCTTACATTTTCCTGTTTTATAAATGCATCCTTCTTTCTAACATTGATGATCAAG

Network for GWHGAAEX012747

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10033.8	ATG13	18	262	2.60E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08331	ATG13	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Longevity regulating pathway	map04211

Gene Ontology

GO term	Ontology	Name
GO:0006914	Biological Process	autophagy
GO:1990316	Cellular Component	ATG1/ULK1 kinase complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.020
SRP064423	SRR2545915	Juvenile tuber	7.720
SRP108465	SRR5643513	five period of Gastrodia elata	4.320
	SRR5643514	five period of Gastrodia elata	5.140
	SRR5643515	five period of Gastrodia elata	5.330
	SRR5643524	five period of Gastrodia elata	4.620
	SRR5643525	five period of Gastrodia elata	7.040
	SRR5643528	five period of Gastrodia elata	5.250
	SRR5643658	five period of Gastrodia elata	8.370
	SRR5643659	five period of Gastrodia elata	4.080
	SRR5643660	five period of Gastrodia elata	3.850
	SRR5643661	five period of Gastrodia elata	4.400
	SRR5643662	five period of Gastrodia elata	3.830
	SRR5643663	five period of Gastrodia elata	4.510
	SRR5643664	five period of Gastrodia elata	4.960
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.940
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.830
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.570
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.880
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	4.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.360
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.040
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.440
SRP279888	Gastro	Gastrodia elata tuber	6.56
	Juven	Juvenile tuber	6.25
	Mother_Gastro	Mother tuber of Gastrodia elata	5.98
	Mother_Juven	Mother tuber of Juvenile	7.10