Detail information of GWHGAAEX012748/evm.TU.scaffold_45.119
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0861 | 7.00E-121 | SNARE protein YKT6, synaptobrevin/VAMP syperfamily |
| nr | gi|743764411|ref|XP_010912410.1| | 1.55E-129 | PREDICTED: VAMP-like protein YKT61 [Elaeis guineensis] |
| Swissprot | tr|Q9ZRD6|YKT61_ARATH | 2.00E-121 | VAMP-like protein YKT61 (Precursor) |
| trEMBL | tr|B9SBY5|B9SBY5_RICCO | 3.00E-123 | Snare protein ykt6, putative {ECO:0000313|EMBL:EEF38843.1} |
| TAIR | AT5G58060 | 7.00E-121 | SNARE-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 4894308 | 4925479 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012748
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13774.5 | Longin | 55 | 119 | 1.60E-11 |
| PF00957.20 | Synaptobrevin | 144 | 201 | 4.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08516 | YKT6 | SNARE interactions in vesicular transport | map04130 |
| Autophagy - yeast | map04138 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016192 | Biological Process | vesicle-mediated transport |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.790 |
| SRR2545915 | Juvenile tuber | 33.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 34.260 |
| SRR5643514 | five period of Gastrodia elata | 36.800 | |
| SRR5643515 | five period of Gastrodia elata | 34.170 | |
| SRR5643524 | five period of Gastrodia elata | 35.850 | |
| SRR5643525 | five period of Gastrodia elata | 47.580 | |
| SRR5643528 | five period of Gastrodia elata | 56.840 | |
| SRR5643658 | five period of Gastrodia elata | 54.940 | |
| SRR5643659 | five period of Gastrodia elata | 22.230 | |
| SRR5643660 | five period of Gastrodia elata | 23.440 | |
| SRR5643661 | five period of Gastrodia elata | 24.140 | |
| SRR5643662 | five period of Gastrodia elata | 20.750 | |
| SRR5643663 | five period of Gastrodia elata | 20.650 | |
| SRR5643664 | five period of Gastrodia elata | 18.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 33.420 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 46.950 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 37.660 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 35.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 36.870 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 36.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.250 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.120 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.120 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.95 |
| Juven | Juvenile tuber | 29.07 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.95 | |
| Mother_Juven | Mother tuber of Juvenile | 22.83 |