Gene detail

Detail information of GWHGAAEX012760/evm.TU.scaffold_45.135

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672116543\|ref\|XP_008781438.1\|	1.09E-164	PREDICTED: protein SET DOMAIN GROUP 41 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q3ECY6\|SDG41_ARATH	3.00E-65	Protein SET DOMAIN GROUP 41
trEMBL	tr\|W5C0H5\|W5C0H5_WHEAT	9.00E-125	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_2DL_CFB4E48DB.2}

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	5478952	5504106	-

Transcript Sequence
>GWHTAAEX012760 ATGCTTTGTCTGGGCAGGGCTTTCACGGCGGGCCCTAGGAAGCCCAAATCTCTTTGGGAGTGCCAAAACCTCCGAGGCACACTTCCGGGAATCCGCAATCCGCAATCCGCAATCCGCGACGTTATGGAAATCAAAGCAGGGGTAGACACACCTATGTCCAACGACCTAACACCACCAATCCCTCCCATCGCCGCCTCTCTTCATGACAAATTCCTTAATTCGCATTGCTCTTCCTGCTTCCTTCCTCTTCCCTCTTGTTCCTCCTCGACTTCTTTTTACTCTTCCAGCACAAATCCTCTTCTCACTTGCTCCTTTTGTTCCGCATCCTTTCAGTACTGCTCCCCCGACTGCGCTTCTGCAGATTCCGGCCTCCATATTTCCACCGGTGAATGCCGCCTTTTCATTCTCCGTCCACTTTCTCCCAACGGCGATACCGCCGACGTGCGCGTCGCTCTCCGTCTCTTGCATTTGTTTGAGCACCTCGGCCTTCTCCGTTCTTCTTCCCCTCACCTTGATTCATCGCGCCGTATCGGTGGTTTGCTTGCTAGTGGAGTTTCTGAAGTCATGGACGAAGGAGGAGAGCTGGCGGAGAGGATCCGAGAAGGGGCGGCATTGATGTCCCAAGCTAGAAATTCTATATTGGTTGGGGGTTGTAGCTTGGAGGAGGTGTTATGGACGGTGATGACCAATGCTGTGGAGGTGGAAATTGGTGAATTCGGCAGGATAGGAGTGGCAGTGTACGGGCCTTGGTTCTCATGGTTTAACCATAGTTGCGTTCCTAATGCTTGCTACCATTTTGAGTATTCTTCCGTGCTCGAATTATCCCGGCCTTGTGATTTGGGGCTTTTTAAAATTTTGCCTGCTGGTTGCGCTAGAGAAGCACTGGATATGAAGTTGTGGAATTACGCTGAGAGTAGTTTATCTCATGGCTTGTGTTTGTTCGGCCCTAGAATTATAATCCGCAGTGTCAAACCATTAAAGAAAAATGACATAGTTTGCATTGCATACACAGACCTTTTGCAGCCCAAGGTATTGCGGCACATTGATTTGTGGTCAAGATATCGATTTGTCTGCCACTGTGAGCGCTGTTGCATATCACCACAAATGCATGCTGATCACATTCTCAACTGTGATGCCAGGAGCTTCAACGTGGAAAATTGCTGCTACATTGATTCAGAATGGATGAATGTTTCTGATTATCTGGAAGAAATAATAGCTGAATATATGCTAGATGGAAATCCAGAAAAATGCTGTAAAAATCTAGAGAACTTGCTTTGTGATAGCTTCCATCACACTTCATCTGATGATGCATCCGAATTAAGATTCAGGCTGCATCCCTTTCATTTTCTTTCTTTGAAAGCTTACATTGTTTTGTCATCCACATACACAATACAAGCTAGCAACATTGATTTCGTTGATTTGAGTTTCAGTGATATTTCCAAGAATTTCAAGATAGCTCGAACAGCTGTTGCTAGCTCATTACTGATTGCCTGTGCTATTCATCATTTGTTTATGTCCGAAACTTCGATCATTCAAAATGCTGCACTTTTCTGGATTGATGCTGGAGCTTCTATTTTATATCTTATTAGAGTTGCAAGATTTTTAGGTCAGTTTATTGGTTCCAGCATCAGCTTGACGTGCATTGGTTCTCACTTCACTATAGAAAATGGCCAATCTAAATCACCGGAGGATTTACTGGCGGTTTCCTCACAGTTTATTGATAGCATTTCTCATATTTTAATAAATTTGTGGCCATTTGTGTCTCAAGGGAATTCTTATTTGGAATGCATTGACAATCCTGCAAAATTCAGCTGGCCACAGATCAGAAATAATTATCAAAGTTCTGATGGAAGCTGTGAAGGTGATAAACATCTTGCTAAAAATTTAGAATGGAATGAACTGACCCAACTTGCTGTTTACTGTTTAATGTACGGTAGATATCTTGCTAATATTTGCCATGGCTCAAAAAGCCATTTATCTCAAAAAGCTGGAGATCTTGAACGTCTCCTAAAAGAGACAGTGTTGTAA

Network for GWHGAAEX012760

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11426	SMYD	Metabolic pathways	map01100
K11426	SMYD	Lysine degradation	map00310

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	5.020
SRP064423	SRR2545915	Juvenile tuber	4.370
SRP108465	SRR5643513	five period of Gastrodia elata	4.460
	SRR5643514	five period of Gastrodia elata	5.760
	SRR5643515	five period of Gastrodia elata	5.210
	SRR5643524	five period of Gastrodia elata	5.190
	SRR5643525	five period of Gastrodia elata	4.350
	SRR5643528	five period of Gastrodia elata	5.160
	SRR5643658	five period of Gastrodia elata	4.530
	SRR5643659	five period of Gastrodia elata	6.190
	SRR5643660	five period of Gastrodia elata	6.010
	SRR5643661	five period of Gastrodia elata	5.530
	SRR5643662	five period of Gastrodia elata	6.310
	SRR5643663	five period of Gastrodia elata	6.320
	SRR5643664	five period of Gastrodia elata	5.710
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.330
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.420
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.210
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.450
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.840
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.090
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	8.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.320
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.660
SRP279888	Gastro	Gastrodia elata tuber	6.44
	Juven	Juvenile tuber	5.94
	Mother_Gastro	Mother tuber of Gastrodia elata	5.27
	Mother_Juven	Mother tuber of Juvenile	6.31