Gene detail

Detail information of GWHGAAEX012761/evm.TU.scaffold_45.138

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|224373108\|ref\|YP_002607480.1\|	2.00E-49	putative DNA helicase [Nautilia profundicola AmH]
KOG	KOG1801	5.00E-173	tRNA-splicing endonuclease positive effector (SEN1)
nr	gi\|743817520\|ref\|XP_010930957.1\|	0	PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Elaeis guineensis]
Swissprot	tr\|B6SFA4\|MAA3_ARATH	0	Probable helicase MAGATAMA 3
trEMBL	tr\|M0TA66\|M0TA66_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P25700_001}
TAIR	AT4G15570	5.00E-173	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000052	5576579	5647204	-

Transcript Sequence
>GWHTAAEX012761 GTCTAATCGCAAAAAGAGAACAAACGATACCCACGGACACCGAGCGCGCCCATAGTTCAGCCGCGTTGATCCTACTGCTGACCTCACTATACTTTCAAACAGTCGGAATGGAGCGGAACTTCGTCTTCCGCCGTTTTATACTCGCCCTTGCCTCTCGAAGAACGTAGGAAGTACATATAATTGAAGATGGTATGGCGGTCGAAAGGCCTGTACCAGCATCCACTTTCTCTATTTCCGTGCTTTCCCGATTCCAAAGGATCATCCTCGGCTGGGACTACCTTCGCATCCTCAGAGAATCTGGGAAAAAGTACTGCAAAGAGGGGCTAAAGAGCGTGAAGAGCACTTTTGACAGCGTGGAGGATTACATAGGAGTCTTTGAGCCCTTACTTTTTGAAGAAGTGAAGGCCCAAATCGCTCAAGGGAAGGATGGGGAAGAAGCTATGGATTGGCAGAGAGGCGCTGTTGCTTCCTGCCAGGAAGCTGATGAATTTCATAAACTGTCTCTTGTCGTTTTAGATGATTTCCGAGAGGAAGTATCTGAAAACGATCTCTTACTCCTTTCAAGTGATAAGTTTCAAGAAGGGGAAGCACCGAATGCTTATGCTATGGCACTGGTAGATTGTAGAGGTGGTAAAGAAACTGTAGCAGTTCTAACTTATCTCTCAGGGGAGATAAAACACCTAGACAAAATGGAAACTAAATCTAGTCCAAGGTTATTGAAGATGCTTTCGATTTTTAAAACAACTGAAAGTTTTCTATGGATTCTAAAGATTTGCAGCTTATCAACTATCATGCGCGAATATACAGCCATGCATTCCATTGCACATCTTCCTTTCAAGGATTTGATTTTGTCTGCTTCTGATAAGTCATATAGTAGTATTTCTGAAGGCCAGGCCTGGAATGTTCCCAAACCTCTCATGGAGCACCTTGAAGACTGTCTCAACAGTTCACAGCTAGATGCCATAAATGCAGGCCTTTCACGTAAGCCATTTGTTTTAATTCAGGGTCCTCCAGGAACAGGAAAAACACAAACAATTATAGGACTTCTTAGTGCTCTTCTTCATTCATCTCCTATGAGAGTGCACTCCAATGGTGAAACTTCATGTGTAATACAGAGACCAAGAATGTCTATTGAAGAGAGGCATAATCACTGGAGAAAAGCTTCTCCATGGTTAACTGATTTGAGTCCAAGAGATCTGATCAGACCTATTGATGGTGATGATGGATTTTATCCTGTTGGGAATGAACTGAAACCTGAAATTGTCAAATCTAACCGCAAATATAGGATGCATGTGCTGGTTTGTGCTCCCTCAAACTCTGCACTTGATGAGATAGTACTACGAATTTTGCACAGAGGTGTTCGTGATGAAAATAACCATGTCTACAATCCCAAAATTGTGCGAATTGGGTTAAAGCCACATCATTCAGTTCAAGCGGTGTCTATGGATTATATTGTAGAGCAAAAACTTGCAAGCTTGGATCATTCAACATCTGCTAATGGAAAGTCTGGAGGATATGTAGACCGCGATAAAATTCGCACATCAATTCTTGATGAATCAGCTATTGTGTTCTCCACTCTGAGTTTTAGTGGGTCAGCTCTTTTCAGCCGAATGAATCGTATATTTGATGTTGTTATAATTGATGAAGCTGCTCAAGCGGTGGAACCAGCAACTCTAATCTCTCTAGCACACGGTTCCAGACAAATATTTCTTATCGGTGATCCTGTTCAATTGCCAGCCACGGTCATTTCTCCGACTGCTGAGAGATTTGGGTATGGGACAAGTTTATTTAAAAGATTTCAGGAGGCTGGATTTCCTGTACAAATGCTCAAAACACAATACCGCATGCATCCAGAGATAAGCATATTCCCTTCAAAAGAGTTCTATGACGGTTCTCTGGAGGATGGAGAGTTGTTGAAAAAAAGTACAGAAAGGCTGTGGCATGAATATCGATGCTTTGGCCCTTTTTGTTTCTTTGACATTGATGGAATTGAATCCCAGCCTTCTGGATCAGGTTCTTGGGTCAATGAAGATGAGATAGAGTTCATAGTTCTTTTGTATCATAAATTAGCAAGCCAATATTCAATTCTCAAGTCAAGTTCCCAATTGGCAATCATTTCCCCGTATCGGTATCAAGTGAAGTTCCTTCATGAAATGTGTCGAGCTACTTTTGGGGAGAAATATAATCAAGCTGTAGATATAAATACTGTTGATGGGTTCCAGGGCCGGGAAAAAGATGTTGCAATCTTTTCTTGCGTTAGATCAAATAGTGAGAAAGGTATTGGATTTGTCTCTGACTTTCGACGAATGAATGTGGGCATAACTAGAGCAAGATCATCTGTGCTGGTTGTGGGTTCAGCTTCTACATTAATGCGGGATGATCATTGGAGAAACTTAGTCAACAGTGCGAAAGAACGCAACTGTTATTTTAAGATTACAAAGCCATATGCATCATTTTTCAGTGATGCCAATCTAGAAACGTTGAGAGTACAGTCTAAAATGGAAAAGAAAATTCAGGATTTGAATGAGTTTGTGGCCCCATCCGATTTTGTTTCTGATCAAGTGGACGAGGTTCAGGAAGGACTACTTGGGGACGAAGGCATGGATGCTGATTATGGAGGATTCGATGAAGACTGAATTTTATGGGATATGACATTAACATGAAACCATTCAGCCTCCACGAGCAAGTGTACTTCAGGTGTTCAGGCCCTTTTCTTGGTCATATTGTTCATTTAAATAGCTTCCCAAATATTTATATATTTAAAAAAAAAAAATGTGCTTGATCAAATTTTATAATTTTGTAATTGTAGTACTTTAGGAATTTACTTGTATTGAGAAGGCGCTTATGAAATCCCCTCATTAAAAGATGGCAAACGCTAAGCTGCTGCACGCCACGCCCAGCCCAAAGCGCGTGGGGGCAGCTAATAAAAAAATTGCTTAAGTTGGACTAAAGCTTAACCTAACTTGATTATGTATCGAAATTCAATCTTGGAGAATAAGGAGATTAGGAAATTATTAAATCTGCTACTTGATTAAGAATTAATCCAAATAAGTATATTATCATGTCGTTTGCCTAATGTGATGGTGCTATAAAGCATTTTGAAATCAAATTTAAATAAGATTACCATTAACATGATTTACCCAAAGAATTTTGATTATTTATATGTTTTATTATTTTTAATAAGATTACCA

Network for GWHGAAEX012761

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13086.5	AAA_11	250	428	5.20E-28
PF13086.5	AAA_11	445	520	1.10E-28
PF13087.5	AAA_12	528	723	5.60E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	90.280
SRP064423	SRR2545915	Juvenile tuber	110.710
SRP108465	SRR5643513	five period of Gastrodia elata	51.110
	SRR5643514	five period of Gastrodia elata	41.280
	SRR5643515	five period of Gastrodia elata	46.150
	SRR5643524	five period of Gastrodia elata	40.920
	SRR5643525	five period of Gastrodia elata	40.850
	SRR5643528	five period of Gastrodia elata	34.860
	SRR5643658	five period of Gastrodia elata	38.700
	SRR5643659	five period of Gastrodia elata	68.810
	SRR5643660	five period of Gastrodia elata	69.570
	SRR5643661	five period of Gastrodia elata	66.520
	SRR5643662	five period of Gastrodia elata	71.070
	SRR5643663	five period of Gastrodia elata	80.680
	SRR5643664	five period of Gastrodia elata	81.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	44.710
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.200
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.660
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.420
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	22.030
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.050
SRP279888	Gastro	Gastrodia elata tuber	70.96
	Juven	Juvenile tuber	113.48
	Mother_Gastro	Mother tuber of Gastrodia elata	33.56
	Mother_Juven	Mother tuber of Juvenile	54.41