Detail information of GWHGAAEX012762/evm.TU.scaffold_45.140
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|110834022|ref|YP_692881.1| | 1.00E-90 | ATP-dependent DNA helicase RecQ [Alcanivorax borkumensis SK2] |
| KOG | KOG0351 | 0 | ATP-dependent DNA helicase |
| nr | gi|743765333|ref|XP_010912885.1| | 0 | PREDICTED: ATP-dependent DNA helicase Q-like 5 [Elaeis guineensis] |
| Swissprot | tr|Q0WVW7|RQL5_ARATH | 0 | ATP-dependent DNA helicase Q-like 5 |
| trEMBL | tr|I7HIQ8|I7HIQ8_ORYSA | 0 | H0302E05.5 protein {ECO:0000313|EMBL:CAD79702.2} |
| TAIR | AT1G27880 | 0 | DEAD/DEAH box RNA helicase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000052 | 5733861 | 5758760 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012762
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00270.28 | DEAD | 180 | 344 | 1.30E-15 |
| PF00271.30 | Helicase_C | 386 | 485 | 4.00E-17 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006310 | Biological Process | DNA recombination |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.820 |
| SRR2545915 | Juvenile tuber | 8.550 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.030 |
| SRR5643514 | five period of Gastrodia elata | 10.850 | |
| SRR5643515 | five period of Gastrodia elata | 8.670 | |
| SRR5643524 | five period of Gastrodia elata | 9.260 | |
| SRR5643525 | five period of Gastrodia elata | 7.490 | |
| SRR5643528 | five period of Gastrodia elata | 9.310 | |
| SRR5643658 | five period of Gastrodia elata | 7.820 | |
| SRR5643659 | five period of Gastrodia elata | 7.960 | |
| SRR5643660 | five period of Gastrodia elata | 10.450 | |
| SRR5643661 | five period of Gastrodia elata | 7.180 | |
| SRR5643662 | five period of Gastrodia elata | 8.540 | |
| SRR5643663 | five period of Gastrodia elata | 8.540 | |
| SRR5643664 | five period of Gastrodia elata | 7.610 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.970 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.160 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.160 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.24 |
| Juven | Juvenile tuber | 8.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.99 | |
| Mother_Juven | Mother tuber of Juvenile | 9.52 |