Detail information of GWHGAAEX012768/evm.TU.scaffold_46.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434403144|ref|YP_007146029.1| | 2.00E-07 | MIP family channel protein [Cylindrospermum stagnale PCC 7417] |
| KOG | KOG0223 | 5.00E-73 | Aquaporin (major intrinsic protein family) |
| nr | gi|695073129|ref|XP_009383716.1| | 1.56E-104 | PREDICTED: aquaporin SIP1-1-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9ATM2|SIP12_MAIZE | 2.00E-90 | Aquaporin SIP1-2 |
| trEMBL | tr|M0RS45|M0RS45_MUSAM | 6.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14150_001} |
| TAIR | AT3G04090 | 5.00E-73 | small and basic intrinsic protein 1A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000042 | 66994 | 83543 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012768
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00230.19 | MIP | 4 | 224 | 2.40E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0015267 | Molecular Function | channel activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 29.670 |
| SRR2545915 | Juvenile tuber | 27.820 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.730 |
| SRR5643514 | five period of Gastrodia elata | 40.990 | |
| SRR5643515 | five period of Gastrodia elata | 43.650 | |
| SRR5643524 | five period of Gastrodia elata | 46.100 | |
| SRR5643525 | five period of Gastrodia elata | 46.790 | |
| SRR5643528 | five period of Gastrodia elata | 66.170 | |
| SRR5643658 | five period of Gastrodia elata | 61.760 | |
| SRR5643659 | five period of Gastrodia elata | 47.280 | |
| SRR5643660 | five period of Gastrodia elata | 38.770 | |
| SRR5643661 | five period of Gastrodia elata | 55.960 | |
| SRR5643662 | five period of Gastrodia elata | 46.150 | |
| SRR5643663 | five period of Gastrodia elata | 40.950 | |
| SRR5643664 | five period of Gastrodia elata | 35.450 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 42.090 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 25.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 24.860 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 29.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 24.750 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 37.870 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 39.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 39.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 33.74 |
| Juven | Juvenile tuber | 58.40 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 54.48 | |
| Mother_Juven | Mother tuber of Juvenile | 59.27 |