Gene detail

Detail information of GWHGAAEX012785/evm.TU.scaffold_46.36

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2441	mRNA splicing factor/probable chromatin binding snw family nuclear protein
nr	gi\|695031158\|ref\|XP_009403081.1\|	PREDICTED: SNW/SKI-interacting protein [Musa acuminata subsp. malaccensis]
Swissprot	tr\|O80653\|SKIP_ARATH	SNW/SKI-interacting protein
trEMBL	tr\|A0A0A0LIR8\|A0A0A0LIR8_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN60592.1}
TAIR	AT1G77180	chromatin protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000042	1861539	1864441	-

Transcript Sequence
>GWHTAAEX012785 TATATAAACTTCTTCTCACAGCCCTAAAGAATCCCAAAGTTCCTTCTTCTGATCGAGCCGAAACCGGGCGAAACCGATCTCCCCATTCGACCCATTCGACGCAAGGGTCATCGATTTCTCCCTCCTTTCGAAAAGTTCGCCGGTCTCTCCTTCCTCCATTCGGCGGCGCAAAGAGACACTGATTCTTTTTCCCCCTAGTGCGCCGGCAAGGTTTCGAGTAGGATAATTTTTTTGGTGGATCTACGACATGTCTCTGAAGGAACTTATTCCTCCATCAAAATCTACATCATCCTCCTACTATGACCACTCAAATGATTCATGGTTCAAGGAAAGGTACAGTTTGTCTGCCTCAGATCTTTCACAGCCTGCGTCTGTCAAACCAAACCCTGTTCCTCCCTATGGAAAGCGGTCGGGCTTTGTCCCTCGAAGGCCGGAGGACTTTGGAGATGGAGGTGCTTTCCCTGAGATCCATGTGGCTCAGTACCCCCTTGGAATGGGCAGAAAGGATGAGAAACCTGGCTCAAAGATTTTGCCGCTCACTGTTGATTCTCAGGGAAAGGTTGCTTTTGATGCAATCGTGAAGCAGAATGAAAATTCATCAAAAATTGTCTATTCACAGCACAAAGATCTTGTTCCTAAGGTTGCTCTGGAGAAAAAAGAGGAGCCGGAGGATGAATTGCAGAAAGAGATTGAAGAAACTACTCAGCGAACCAAGGCTGCACTTGAGAAAATTGTTAATGTGAGGCTGAGTGCAGCACAGCCAAAGAATGTCCCGACCCAGTCACAGGATTCCAAATATATCAAATACAAGCCTTCACAGCAGTCGGCTGCATTCAATTCTGGTGCTAAGGAGAGGATTATTAGAATGGTCGAGATGCCTGTTGACCCTCTTGAACCTCCCAAGTTTAAGCACAAGAGGGTTCCGAAAGCGTCAGGCTCTCCACCAGTGCCAGTGATGCACTCTCCTCCAAGGCCTGTTACTGTTAAGGACCAGCAGGATTGGAAGATCCCCCCTTGCATTTCTAATTGGAAGAACCCTAAGGGTTACACTATTCCTCTTGATAAGCGCCTTGCTGCTGATGGAAGGGGACTTCAAGAGGTACAGATTAATGATAACTTTGCAAAGCTATCAGAAGCTTTGTATGTTGCGGAACAGAAGGCCAGAGAGGCTGTGGCTATGAGATCCAAGGTGCAGAGGGAATTGATGTTGAAGGAAAAAGAGAGGAAAGAGCAGGAGCTTCGCGCTCTTGCTCAGAAAGCACGATCGGAGAGGACTGGCATCGCACCGGCTCCTGTAGCTCACGCCCCTTCCGATAAGGCCATGCTAGATGATGATGATGATGATGGCGAGGCTGGAATGGAACGGCATGAGCCACCTCCTCGAAAGGAGACAAGGGAGGAAAGAGAAGAACGTATGCAACGTGATAAAATTCGCGAGGAGAGGAGGCGTGAGAGGGAGAGAGAGAGGCGGTTGGAGGCTAAAGATGTTGCCATGGGGAAGAAGAGTAAGATCACAAGGGATAGGGACCGCGATATCAGTGAGAAAGTTGCTCTTGGTATGGCTAATATTGGTGCAAGGCAGGGTGAAATTTTATATGATCAGAGACTTTTCAACCAGGACAAAGGAATGGAATCTGGTTTTGCTGCTGATGATCAATATAACATCTATGATAAGGGCCTTTTCACTGCACAACCCACGTTGTCAACACTCTATAGGCCGAGGAAAGATACTGATTCGGAAATGTATGGAGGTGCTGACGAGCAGTTGGAAAAGATTATGAAGACAGATAGGTTTAAACCGGACAAGGCTTTCTCTGGTGTGCAAGATAGACCTTCCGGAAGTAAGAGAGATAGACCAGTAGAGTTTGATAAGCAAGAGGAGAATGATCCCTTTGGTTTGGATCAGTTCTTGACAGAAGTTAAGAAAGGAAAGAAAGCAATGGATAAGATAGGCGGAGGGGGTACAATGAAAGCTAGTGCAGGATCTTCAATGAGAGAGGACTATGAGGGAGGCGGTTCAGGAAGGACTCGCATTGCTTTTGAGAGGGGACGCTGAGAGGGAAGGGGACTCGGTTATCTTAATAAGGTGGGGATCCCGAAAAGTGATTAGCTTCTTATGAATCTTAGTTTAAGGTTTGGATTTTCAATGTTCAAGTGCGTTTATTCAAACGTGCGAAAGGTAAGCTTGATTTAAAGGTTGCTATTGGCAGTCAAAACATTGAAAACATTGTTATTAATATGGAATGTTGCATTTTAGGATATGCTTGTTTCCCACATTTAGATTTTTTCTTTTTTGTTAAAATTATGGTAGATTTACTAGATTAACACCCAAATCCCAGTATTAATTTATCTAGTGATCGTTTCATTACTTGCATGCTCAGTTCATTTCATTATCCCATGTATGAAATGCCATCTACTTATATTGAATGGGAGTGCTTCTGTGGTGTGCTATTTCTGATATAAATGAGCAGATTTTGGTTAAATATGCCAACAGGAAGATTTCGGCGCTGCTAATTATCAACCGCTGGAAATGGAAAGGTTTATTTTTTCTAGTAGTTACAGAACAATGTGAAACAAGTTAACTAGATAAATTTGTTATTATAAAGTTGTTCATTTCTTACTGTGTATTAGTTGATGCTTTGATTTGAG

Network for GWHGAAEX012785

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02731.14	SKIP_SNW	183	342	5.00E-75

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06063	SNW1, SKIIP, SKIP	Spliceosome	map03040
K06063	SNW1, SKIIP, SKIP	Notch signaling pathway	map04330

Gene Ontology

GO term	Ontology	Name
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0005681	Cellular Component	spliceosomal complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	229.880
SRP064423	SRR2545915	Juvenile tuber	144.750
SRP108465	SRR5643513	five period of Gastrodia elata	73.080
	SRR5643514	five period of Gastrodia elata	80.180
	SRR5643515	five period of Gastrodia elata	60.650
	SRR5643524	five period of Gastrodia elata	74.390
	SRR5643525	five period of Gastrodia elata	60.360
	SRR5643528	five period of Gastrodia elata	54.210
	SRR5643658	five period of Gastrodia elata	69.300
	SRR5643659	five period of Gastrodia elata	89.550
	SRR5643660	five period of Gastrodia elata	84.340
	SRR5643661	five period of Gastrodia elata	78.870
	SRR5643662	five period of Gastrodia elata	76.440
	SRR5643663	five period of Gastrodia elata	82.410
	SRR5643664	five period of Gastrodia elata	76.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	99.530
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	99.050
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	94.800
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	115.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	103.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	131.510
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	110.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	105.350
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	78.620
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	98.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	75.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	75.380
SRP279888	Gastro	Gastrodia elata tuber	76.28
	Juven	Juvenile tuber	133.74
	Mother_Gastro	Mother tuber of Gastrodia elata	43.82
	Mother_Juven	Mother tuber of Juvenile	82.66