Detail information of GWHGAAEX012786/evm.TU.scaffold_46.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|442555271|ref|YP_007365096.1| | 2.00E-07 | RNA recognition domain-containing protein [Lawsonia intracellularis N343] |
| KOG | KOG0123 | 9.00E-20 | Polyadenylate-binding protein (RRM superfamily) |
| nr | gi|449533142|ref|XP_004173536.1| | 6.49E-24 | PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus] |
| Swissprot | tr|P42731|PABP2_ARATH | 3.00E-20 | Polyadenylate-binding protein 2 |
| trEMBL | tr|V4SJR1|V4SJR1_9ROSI | 1.00E-22 | Uncharacterized protein {ECO:0000313|EMBL:ESR47968.1} |
| TAIR | AT4G34110 | 9.00E-20 | poly(A) binding protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000042 | 1865737 | 1888740 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012786
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.21 | RRM_1 | 37 | 87 | 3.60E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K13126 | PABPC | RNA transport | map03013 |
| mRNA surveillance pathway | map03015 | ||
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.140 |
| SRR2545915 | Juvenile tuber | 0.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.310 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.140 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.470 | |
| SRR5643528 | five period of Gastrodia elata | 0.150 | |
| SRR5643658 | five period of Gastrodia elata | 0.470 | |
| SRR5643659 | five period of Gastrodia elata | 0.500 | |
| SRR5643660 | five period of Gastrodia elata | 0.140 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.210 | |
| SRR5643664 | five period of Gastrodia elata | 0.380 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.000 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.28 |
| Juven | Juvenile tuber | 0.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.32 | |
| Mother_Juven | Mother tuber of Juvenile | 0.26 |