Detail information of GWHGAAEX012787/evm.TU.scaffold_46.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41975.00E-37FOG: PPR repeat
nrgi|695033119|ref|XP_009404087.1|1.07E-40PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9LXF2|PP385_ARATH1.00E-37Pentatricopeptide repeat-containing protein At5g15300
trEMBLtr|F6H5U9|F6H5U9_VITVI5.00E-41Putative uncharacterized protein {ECO:0000313|EMBL:CCB47570.1}
TAIRAT5G153005.00E-37Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000004218888541889342-
Transcript Sequence

Network for GWHGAAEX012787

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module4

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12854.6PPR_121523.60E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms4.530
SRR2545915Juvenile tuber4.600
SRP108465SRR5643513five period of Gastrodia elata6.570
SRR5643514five period of Gastrodia elata3.000
SRR5643515five period of Gastrodia elata5.130
SRR5643524five period of Gastrodia elata1.490
SRR5643525five period of Gastrodia elata9.620
SRR5643528five period of Gastrodia elata6.700
SRR5643658five period of Gastrodia elata10.730
SRR5643659five period of Gastrodia elata7.810
SRR5643660five period of Gastrodia elata8.880
SRR5643661five period of Gastrodia elata9.900
SRR5643662five period of Gastrodia elata12.160
SRR5643663five period of Gastrodia elata9.270
SRR5643664five period of Gastrodia elata11.080
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.490
SRR6049655Rhizomagastrodiae_C368-T10_good_15.090
SRR6049656Rhizomagastrodiae_C368-T07_good_114.000
SRR6049657Rhizomagastrodiae_C368-T07_good_117.180
SRR6049658Rhizomagastrodiae_C368-T04_good_122.650
SRR6049659Rhizomagastrodiae_C368-T04_good_120.860
SRR6049660Rhizomagastrodiae_C368-T01_good_117.750
SRR6049661Rhizomagastrodiae_C368-T04_good_117.020
SRR6049662Rhizomagastrodiae_C368-T01_good_113.460
SRR6049663Rhizomagastrodiae_C368-T01_good_113.220
SRR6049664Rhizomagastrodiae_C368-T10_good_17.070
SRR6049665Rhizomagastrodiae_C368-T10_good_17.070
SRP279888GastroGastrodia elata tuber 13.49
JuvenJuvenile tuber7.30
Mother_GastroMother tuber of Gastrodia elata 17.82
Mother_JuvenMother tuber of Juvenile 6.84