Detail information of GWHGAAEX012795/evm.TU.scaffold_46.57
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3122 | 2.00E-08 | DNA-directed RNA polymerase III subunit |
| nr | gi|242065210|ref|XP_002453894.1| | 1.14E-13 | hypothetical protein SORBIDRAFT_04g021023 [Sorghum bicolor] |
| trEMBL | tr|C5XSP1|C5XSP1_SORBI | 4.00E-14 | Putative uncharacterized protein Sb04g021023 {ECO:0000313|EMBL:EES06870.1} |
| TAIR | AT4G25180 | 2.00E-08 | RNA polymerase III RPC4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000042 | 2917728 | 2931188 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012795
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05132.13 | RNA_pol_Rpc4 | 73 | 115 | 4.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03026 | RPC4, POLR3D | RNA polymerase | map03020 |
| Cytosolic DNA-sensing pathway | map04623 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006383 | Biological Process | transcription from RNA polymerase III promoter |
| GO:0003899 | Molecular Function | DNA-directed RNA polymerase activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005666 | Cellular Component | DNA-directed RNA polymerase III complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 0.000 |
| SRR2545915 | Juvenile tuber | 0.000 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.430 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 0.000 | |
| SRR5643660 | five period of Gastrodia elata | 0.000 | |
| SRR5643661 | five period of Gastrodia elata | 0.000 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 0.000 | |
| SRR5643664 | five period of Gastrodia elata | 0.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.530 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 0.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.930 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.000 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 0.000 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.730 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.730 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.00 |
| Juven | Juvenile tuber | 0.00 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.00 | |
| Mother_Juven | Mother tuber of Juvenile | 0.00 |