Detail information of GWHGAAEX012805/evm.TU.scaffold_46.78
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|17233145|ref|NP_490235.1| | 3.00E-21 | WD repeat-containing protein [Nostoc sp. PCC 7120] |
| KOG | KOG0270 | 2.00E-129 | WD40 repeat-containing protein |
| nr | gi|743813676|ref|XP_010929788.1| | 0 | PREDICTED: uncharacterized WD repeat-containing protein C17D11.16-like [Elaeis guineensis] |
| Swissprot | tr|Q9T014|SPA2_ARATH | 2.00E-16 | Protein SPA1-RELATED 2 |
| trEMBL | tr|M0TLX4|M0TLX4_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P02220_001} |
| TAIR | AT4G35370 | 2.00E-129 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000042 | 4500802 | 4556896 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012805
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12894.6 | ANAPC4_WD40 | 257 | 315 | 8.70E-06 |
| PF00400.31 | WD40 | 389 | 428 | 1.80E-07 |
| PF00400.31 | WD40 | 446 | 473 | 0.0056 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.950 |
| SRR2545915 | Juvenile tuber | 20.060 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.520 |
| SRR5643514 | five period of Gastrodia elata | 26.780 | |
| SRR5643515 | five period of Gastrodia elata | 28.920 | |
| SRR5643524 | five period of Gastrodia elata | 26.520 | |
| SRR5643525 | five period of Gastrodia elata | 30.120 | |
| SRR5643528 | five period of Gastrodia elata | 40.780 | |
| SRR5643658 | five period of Gastrodia elata | 26.070 | |
| SRR5643659 | five period of Gastrodia elata | 39.420 | |
| SRR5643660 | five period of Gastrodia elata | 44.270 | |
| SRR5643661 | five period of Gastrodia elata | 36.240 | |
| SRR5643662 | five period of Gastrodia elata | 48.480 | |
| SRR5643663 | five period of Gastrodia elata | 41.630 | |
| SRR5643664 | five period of Gastrodia elata | 42.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 21.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 19.160 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.070 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.890 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.130 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.68 |
| Juven | Juvenile tuber | 53.67 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 51.68 | |
| Mother_Juven | Mother tuber of Juvenile | 60.44 |