Gene detail

Detail information of GWHGAAEX012807/evm.TU.scaffold_46.82

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189220077\|ref\|YP_001940717.1\|	2.00E-06	hypothetical protein Minf_2066 [Methylacidiphilum infernorum V4]
nr	gi\|743873949\|ref\|XP_010906955.1\|	0	PREDICTED: uncharacterized protein LOC105033746 isoform X2 [Elaeis guineensis]
trEMBL	tr\|B6TPP1\|B6TPP1_MAIZE	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM5G801369_P03}
TAIR	AT1G08040	0	Protein of unknown function (DUF707)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000042	4999030	5054027	-

Transcript Sequence
>GWHTAAEX012807 ATGCCGACAATCAGTGGTCTTGGTCCAAATGAGTTGGTTACAACATGGGCTCAACGCCGACGTAAGGGCAGAGACGTGAGGGTGGGGGGGCCGAGATTGTCATTGGAGCATTGCCCTCGTTCCCAACCTATTGGGATTAGGGCGGATGAGTGGATTTGGGTCGGGTGCCCTTCCCGCAATGGGCTTGAGCTAGCAGGACTACTTCTGCGGCCTACGTCGAGCGCGCGTGCTCCCGGCTCGGACGCGTACGCAGTCTTTCTTACATCGCTGTGGACGACGAGCGCGTGCGCTTCCGGATCGGACGCGTTCTTCCTCTATAGCCGTTCTTCTTCGCACCTGCTTCCGGCTCAGAATGGCTGTAGATTAGGGCAAGGCATCGATTCATTTCAGCAAGGGGCTAATAAGAATGCTATGCTTTACTTCCCGTCTAGCATTGTTTCTTACACTGAAGATAAGAATTCAGGCATCCAAGCGCAAACTTTGTTGAATCATGCGTGGACATCTACACTTAATGACAGTTCATTGTTTAATTCAACTAGCAACCCCAAGATATTTGTATCTACAAATCCTAAAGGGGCAGAAAGACTAGCGCCAAAAATTGTTGCATCTGAGTCAGACCTTTATTTGCGCAGATTGTGGGGTAATCCAAGTGAGGATCTGCCTATTAAGCAGAGGTACCTTGTAACATTTACAGTTGGATATGAGCAGAAAAACAATATTGATGCAGCAGTGAAAAAGTTTTCTGGAAATTTCACAATCTTATTGTTTCATTATGATGGGCGGACCAGTGAATGGGATGAATTTGAATGGTCAAAACGTGCTATTCACGTGAGTGTAAAGAGGCAAACTAAATGGTGGTATGCTAAACGTTTTTTGCACCCTGACATAGTTGCTCCTTTTGAATATATCTTTATTTGGGATGAAGATCTTGGAGTAGAGCATTTTAATGCTGAACAGTACATTAAATTGGTGAAAAAACATGATTTAGAGATCTCACAACCAGGTTTGGAGCCTAACAATGGTCTTACATGGCAAATGACTAAGAGAAGAGGAGATCGTGAAGTTCATAAGGAAACGGAGGAAAGACCGGGATGGTGCTCTGCTGGCCCTCACCTTCCTCCATGTGCAGCATTTGTTGAGATAATGGCACCCGTGTTCTCAAGAAATGCATGGAGATGTGTGTGGCATATGATCCAGAATGACTTGGTTCATGGCTGGGGTCTTGATTTTGCACTAAGAAAATGTGTGGAGCCTGCCCATGAGAAAATTGGAGTTGTGGATTCTCAGTGGATTGTGCATCAAGTTATTCCTTCCCTCGGGAAGCAGGGCGAATCAGAAAATGGGAAAGCTCCATGGGAAGGGGTGAGGGAACGATGCCGCAAGGAGTGGGGGATTTTTCAAACTCGGTTGGAGAATGCAGAGAAGGCTTATTATAAACAATTGGGGGTTGCTCCTCCAAACGGCACATTCGCTTGA

Network for GWHGAAEX012807

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05212.11	DUF707	188	475	2.60E-137

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc
Carbohydrate-Active enzymes Family	GTnc
Carbohydrate-Active enzymes Family	GTnc
Carbohydrate-Active enzymes Family	GTnc
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.250
SRP064423	SRR2545915	Juvenile tuber	45.240
SRP108465	SRR5643513	five period of Gastrodia elata	46.250
	SRR5643514	five period of Gastrodia elata	41.270
	SRR5643515	five period of Gastrodia elata	43.680
	SRR5643524	five period of Gastrodia elata	42.780
	SRR5643525	five period of Gastrodia elata	74.870
	SRR5643528	five period of Gastrodia elata	108.860
	SRR5643658	five period of Gastrodia elata	77.980
	SRR5643659	five period of Gastrodia elata	33.890
	SRR5643660	five period of Gastrodia elata	30.090
	SRR5643661	five period of Gastrodia elata	29.930
	SRR5643662	five period of Gastrodia elata	34.550
	SRR5643663	five period of Gastrodia elata	32.930
	SRR5643664	five period of Gastrodia elata	29.370
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.760
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	53.990
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	51.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	35.850
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.620
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	46.240
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	39.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.940
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	62.490
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	66.380
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	78.810
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	78.810
SRP279888	Gastro	Gastrodia elata tuber	38.81
	Juven	Juvenile tuber	27.45
	Mother_Gastro	Mother tuber of Gastrodia elata	104.80
	Mother_Juven	Mother tuber of Juvenile	65.15