Detail information of GWHGAAEX012811/evm.TU.scaffold_46.91
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|336172688|ref|YP_004579826.1| | 3.00E-15 | hypothetical protein [Lacinutrix sp. 5H-3-7-4] |
| nr | gi|672161138|ref|XP_008800372.1| | 0 | PREDICTED: probable inactive receptor kinase At1g27190 [Phoenix dactylifera] |
| Swissprot | tr|C0LGI5|Y1699_ARATH | 0 | Probable LRR receptor-like serine/threonine-protein kinase At1g69990 (Precursor) |
| trEMBL | tr|I1IZ22|I1IZ22_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI5G13960.1} |
| TAIR | AT3G28450 | 0 | Leucine-rich repeat protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000042 | 5620820 | 5623374 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX012811
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 24 | 65 | 0.00036 |
| PF00560.32 | LRR_1 | 121 | 142 | 0.33 |
| PF00560.32 | LRR_1 | 145 | 166 | 1.3 |
| PF00560.32 | LRR_1 | 168 | 187 | 0.099 |
| PF07714.16 | Pkinase_Tyr | 328 | 569 | 9.20E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-Xa |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0005515 | Molecular Function | protein binding |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 32.490 |
| SRR2545915 | Juvenile tuber | 27.010 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 41.230 |
| SRR5643514 | five period of Gastrodia elata | 35.770 | |
| SRR5643515 | five period of Gastrodia elata | 37.210 | |
| SRR5643524 | five period of Gastrodia elata | 32.370 | |
| SRR5643525 | five period of Gastrodia elata | 63.330 | |
| SRR5643528 | five period of Gastrodia elata | 40.550 | |
| SRR5643658 | five period of Gastrodia elata | 62.280 | |
| SRR5643659 | five period of Gastrodia elata | 50.900 | |
| SRR5643660 | five period of Gastrodia elata | 50.080 | |
| SRR5643661 | five period of Gastrodia elata | 57.550 | |
| SRR5643662 | five period of Gastrodia elata | 53.160 | |
| SRR5643663 | five period of Gastrodia elata | 52.680 | |
| SRR5643664 | five period of Gastrodia elata | 52.190 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 57.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 41.140 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 46.880 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 69.870 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 84.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 61.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 44.650 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 44.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.990 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.990 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 43.01 |
| Juven | Juvenile tuber | 57.02 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 139.30 | |
| Mother_Juven | Mother tuber of Juvenile | 55.24 |