Gene detail

Detail information of GWHGAAEX012813/evm.TU.scaffold_47.3

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|474933895\|ref\|YP_007687477.1\|	5.00E-32	putative ATPases of PP-loop superfamily [Thermoplasmatales archaeon BRNA1]
KOG	KOG2316	3.00E-131	Predicted ATPase (PP-loop superfamily)
nr	gi\|672113303\|ref\|XP_008810325.1\|	0	PREDICTED: diphthine--ammonia ligase isoform X2 [Phoenix dactylifera]
trEMBL	tr\|M0RET9\|M0RET9_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr10P02620_001}
TAIR	AT3G04480_1	3.00E-131	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000047	96605	139862	+

Transcript Sequence
>GWHTAAEX012813 GGGAAACTATCGGGTTCGGTTCTTCCTAGTTCGCAAATTCTAGCCTCTCCTCTGGAGGCGCCACCGCCCTGCGCCATAATCAATCTCAGTTCTTTCAACGGCGATCAAGCCTCTCCACCATTTCCGAACTTCCGAGGGAGCGGCGACTGTTAATCGGCGTGATTCTTCCACCATTTCTGAACTTCCTATGGATCGACGTCTGTTTACGCATTCCCCAGGTTAAAACTAGCGAGACTGTTAATGCATTCCCCAGAAAGCTTCGCAAATTCTACCTTTGCCTCCTCTAGCCTGCGCCACCGCCCTGCCGCCATAACAAAGCGCCCTGATCAATCTCAGTTCTTTCAAACGAGCGACGACTGTTAACGCATTGAATCGTTGAAATGAAGGTTGTTGCACTGGTTAGTGGGGGTAAAGATAGCTGCTTCGCGATGATGAAGTGCATTGATTATGGCCACGAGGTTATTGCACTGGCCAATTTGATGCCAGATGATGATTCCATTGATGAATTGGATAGCTACATGTACCAAACTGTTGGCCACCAAATTGTTATTGGTTATGCTGAATGCATGGGCTTACCATTATTTCGCCGAAGAATACAGGGATCAACTAGGAATCATCAATTAAACTATAAAGTTACATCAGGTGATGAAGTTGAGGATTTGTTTATTTTATTAAAGGCAGTTCAGCAACATTTTCCTTCTGTGACTGCTGTTTCATCTGGTGCAATTGCATCTGATTATCAAAGACTCAGAGTGGAGAGCGTTTGTGCCAGGTTAGGCCTTGTTTCTATGGCTTATTTATGGAAGAAAGATCAAGCTCTCCTATTTGATGAGATGATAAGAAGAGGCATTGTAGCTATTATTGTAAAGGTTGCAGCTATGGGTCTGAATCAGAAACACCTTGGGCAAGAACTTGTGGATCTACAAAGCTCTTTGCTACAAATGAAAGAGCTTTTTGGAATCAATGTATGCGGTGAAGGAGGAGAATATGAAACATTAACTCTTGATTGTCCACTTTTTAAACATGCTCGAATTGTACTTGACAAGTTCCAAGTAGTACTACATTCACCAGATTCAATTGCACCTGTTGGTGTTATTCATCCACTGGCTTTCCATTTGGAGAACAAAATAGGTTCTCCTTCAAGCACATATATAGAAAACAATAATTTTATTTCAGAGAAAAAAAATTGTATTATTCATGTAAAGGAAAATTTTTCATCAAATTATTTGGACAAGTGTAAAGCTAAAGATGCGGTGTGTGATATACTTGATACTGTTGGTAGCATAAAGATGTGCATATCAACATGCAAAAGGGAAACATTTACCATTGGCTGTTGGGTTCCAAATTCTAGCCCTCATGAAGCGCTGCAGAAAGATCTCATGGCAGTTCTTCATGCAATTGAGTTGCAACTGAGAGAGGATGATCTTGAGTGGGCTCATGTTTTGTATATTCACCTCTACATTTCAGATATGAAACAATTTGGATTAGCCAACGATGTTTATGTGAGTTTCATTACGGAAAATAAGTGCAATTTCGGTGTTCCATCACGTAGTACAGTTGAAGTGCCTATTGCCGAACTTGGTTTTGGTAATGCATATGTGGAAGCTCTGGTGTCCACCAACCAGTGCAAAAGAGTTTTACATGTGCAAAGCATATCATGCTGGGCTCCTAGTTGCATCGGCCCATATAGCCAGGCGACCTTGCACAAGGAAGTTCTCTATATGGCTGGACAGCTTGGTCTTGATCCTCCCACTATGTTACTCCAACCTGGAGGTCCAAGTGTTGAAATCGATCAGGCATTGCAAAACTGTGAGGCAGTGGCCAATTGTTTTAAAAGCTCTATTTCTACTTCTGCAATTTACATTACTGTTTATTGTTCTGCATCTATGTCTTCATCTGAGATGGCTGAAATTGCAAATCGGATGGAGTGTTTCTTAAAACATCATACACTTTATAATGATGACTCCTTAGGATCATATAATCCAATTATCCTATATGTCCGTGTACCCAATCTTCCAAAGGGAGCACTTGTTGAAGTGAAGCCTGTACTTCATCTGCCGGAGAATGGAGAATGTGGAATTCAATCTGCCTTGCTTAAAGAATCTGTTTCTAGAATACAAAATTGTTGCTGTTTTAACTACCCTGAATGGCATAGCTCTTGTTGCCTGATAAATATTGTCCCTGCCAAGATATGCTTTGGTATGATTTCTGCAGCAGAAGTCCATGCAGGAAACGTATTTTCTGAAGCTGATTATGATCATGTTATTCCCTGCGGCAAACATCTTCAAAACGTGAAAGCAATTGCATTGTTTCTTACTGGTCTCATTGATAAGATTATTTCAGATAATGGTTTTTATTGGCAAGACTTGAAGAGTCTGAGGTTTTACTTCCTGAAAGATTTAGCCGCCTTAGTAGATGTGCTTGCTTCGGCATTTTCGGAGGCTTTCAGCGATTTAGCAGAATTGAGCGGAGAATGGGATGCTGGTAATGCGCCTCCTTTCAGTCTGATCCCAGTTTTGGGCTCTGGTGCATCTTCAGCCATGAGCGATTTGATCACGTGCGAGCTCTTTGCCTCGAAGCTCTGATGAAGCTTAGGTGTTAGATATGTAAAATGCCATGATATGAGTTTGTATGTAGCCCTCGTTTCATTGGCTTACTAGTGAGTGTGTTCTTACTTTTCTGCTAGTTAGAGGGATGTGAACTTTTTCTTAAAAGTCAAAATTATGGAGCTGAATTTTGGGATGCATAATTTGGCAGGTTATCTTTGGTTCCACTTGAAATAATTTTTGAATTATATGGGGTGCATTTTTGAGATGTATAACATTTGATTGGATTTGATTAGATGAAATCGTTAGAAAGGTTCTCTCTTTGGAACTTAGGGAGGGGAGGGGCTTTTATTTGATCGTGCACAATCGAAACAAAGGATTCTTATAGTTGACTCTCCCTAGTGGGATTAAGGCTAGGTGAGGGTGGTGGTATTATTATTGTGAAGATCAAGTGCTTAATATTTCCATTTTTGCTCCCATCTCCAAAGTGCTATCAGCTGTAAGAAATTTCCATTGATAAAGCTTTTATCACAATATTGAATTTCCCTTATTATAATTATAACATAGCCAATTTAAT

Network for GWHGAAEX012813

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01902.16	Diphthami_syn_2	1	223	7.90E-41
PF01042.20	Ribonuc_L-PSP	429	555	1.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.800
SRP064423	SRR2545915	Juvenile tuber	19.070
SRP108465	SRR5643513	five period of Gastrodia elata	12.870
	SRR5643514	five period of Gastrodia elata	14.350
	SRR5643515	five period of Gastrodia elata	11.860
	SRR5643524	five period of Gastrodia elata	14.100
	SRR5643525	five period of Gastrodia elata	10.710
	SRR5643528	five period of Gastrodia elata	10.970
	SRR5643658	five period of Gastrodia elata	10.850
	SRR5643659	five period of Gastrodia elata	12.510
	SRR5643660	five period of Gastrodia elata	12.580
	SRR5643661	five period of Gastrodia elata	11.200
	SRR5643662	five period of Gastrodia elata	11.890
	SRR5643663	five period of Gastrodia elata	11.840
	SRR5643664	five period of Gastrodia elata	11.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	14.870
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	18.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	16.580
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	17.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	17.210
SRP279888	Gastro	Gastrodia elata tuber	12.80
	Juven	Juvenile tuber	9.73
	Mother_Gastro	Mother tuber of Gastrodia elata	9.92
	Mother_Juven	Mother tuber of Juvenile	8.23