Detail information of GWHGAAEX012818/evm.TU.scaffold_47.8


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|327398778|ref|YP_004339647.1|7.00E-09RNP-1 like RNA-binding protein [Hippea maritima DSM 10411]
KOGKOG01148.00E-71Predicted RNA-binding protein (RRM superfamily)
nrgi|672126732|ref|XP_008786825.1|7.38E-79PREDICTED: splicing factor 3B subunit 6-like protein [Phoenix dactylifera]
Swissprottr|Q9FMP4|SF3B6_ARATH2.00E-71Splicing factor 3B subunit 6-like protein
trEMBLtr|A5AES3|A5AES3_VITVI1.00E-77Putative uncharacterized protein {ECO:0000313|EMBL:CAN62387.1}
TAIRAT5G121908.00E-71RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000047257321258087-
Transcript Sequence

Network for GWHGAAEX012818

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_121876.10E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12833SF3B14 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms49.860
SRR2545915Juvenile tuber60.720
SRP108465SRR5643513five period of Gastrodia elata108.790
SRR5643514five period of Gastrodia elata107.140
SRR5643515five period of Gastrodia elata108.350
SRR5643524five period of Gastrodia elata110.410
SRR5643525five period of Gastrodia elata114.190
SRR5643528five period of Gastrodia elata92.380
SRR5643658five period of Gastrodia elata91.930
SRR5643659five period of Gastrodia elata98.860
SRR5643660five period of Gastrodia elata114.140
SRR5643661five period of Gastrodia elata123.240
SRR5643662five period of Gastrodia elata113.290
SRR5643663five period of Gastrodia elata101.600
SRR5643664five period of Gastrodia elata103.870
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_188.850
SRR6049655Rhizomagastrodiae_C368-T10_good_1137.830
SRR6049656Rhizomagastrodiae_C368-T07_good_1106.150
SRR6049657Rhizomagastrodiae_C368-T07_good_178.750
SRR6049658Rhizomagastrodiae_C368-T04_good_189.700
SRR6049659Rhizomagastrodiae_C368-T04_good_176.780
SRR6049660Rhizomagastrodiae_C368-T01_good_196.260
SRR6049661Rhizomagastrodiae_C368-T04_good_185.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1100.040
SRR6049663Rhizomagastrodiae_C368-T01_good_199.470
SRR6049664Rhizomagastrodiae_C368-T10_good_1123.510
SRR6049665Rhizomagastrodiae_C368-T10_good_1123.510
SRP279888GastroGastrodia elata tuber 163.33
JuvenJuvenile tuber157.49
Mother_GastroMother tuber of Gastrodia elata 99.98
Mother_JuvenMother tuber of Juvenile 89.02